PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_05055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 565aa MW: 61542 Da PI: 6.5896 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.4 | 5.3e-32 | 193 | 250 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgsefprsYY+Ct+++C++kk++ers+ d+++++i+Y+g+H+h+k PEQU_05055 193 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCQMKKQLERSH-DGQITDIIYKGRHDHPK 250 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.4 | 1.5e-33 | 368 | 426 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++dpk+v++tYeg+Hnh+ PEQU_05055 368 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCSVRKHVERASHDPKAVITTYEGKHNHD 426 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-27 | 187 | 251 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.365 | 187 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 191 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-34 | 192 | 250 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-24 | 193 | 249 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.4E-38 | 353 | 428 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-29 | 360 | 428 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.607 | 363 | 428 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-39 | 368 | 427 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-26 | 369 | 426 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MMSPARLPIT RSPCLTIPPG FSPGALLESP VLLTNMKAEP SPTTGSFAMP LFVNNGGLAA 60 LGSPKDSSKG CVHEDGSSPF FEFRPHIRLS SRPGLSSLAP SVSLGSNSKL QEFAGKNQSL 120 CETNGSTCSQ LVKTENITQS SAESTWSVTE ANAFPEDASN ELQQTNDSDC RIQALQSDHN 180 GAAPLNSVDK SIEDGYNWRK YGQKHVKGSE FPRSYYKCTH PNCQMKKQLE RSHDGQITDI 240 IYKGRHDHPK PQASRRLAVG GVFNGQEEEK DVFSSLANAE EMFSNAHGHG SHFNPNCNSE 300 LSPVSVSDDE VEVEGGQSGL GGDEAAAEDD PELKRRKLEV ATIDANSIAK NNREPRVVVQ 360 TVSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNPGCS VRKHVERASH DPKAVITTYE 420 GKHNHDVPAA KTGSSTNRES SPPLITDGNI PTSYISHQYT LPEENNAINL RLGVGVGSNP 480 TSLLSETQHL SGLERIPKNH HLQFLSSDCN NVMVQVNPAS KLYGSSNNGM FGSREDKTEG 540 FSFTTQMNNS SSHYYSRADN LVMGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-39 | 192 | 429 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-39 | 192 | 429 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020590548.1 | 0.0 | WRKY transcription factor SUSIBA2-like isoform X2 | ||||
Swissprot | Q6VWJ6 | 1e-160 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A2I0XGQ7 | 0.0 | A0A2I0XGQ7_9ASPA; Putative WRKY transcription factor 20 | ||||
STRING | XP_008800638.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6740 | 38 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-127 | WRKY family protein |