PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04858
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 288aa    MW: 32342.8 Da    PI: 4.5961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04858genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-121560146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde+l ++vk  G+g+W++I ++  + Rt+k+c++rw +
       PEQU_04858 15 KGPWLAEEDEILREYVKNNGPGDWSSIRSKGLLPRTGKSCRLRWVN 60
                     79*************************8876677**********87 PP
2Myb_DNA-binding42.21.9e-1371111345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+   +d+ + +G++ W++Ia +++ gRt++++k++w 
       PEQU_04858  71 KFSPEEERVVIDLQATFGNK-WARIATYLP-GRTDNDVKNFWS 111
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.3871066IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-201263IPR009057Homeodomain-like
SuperFamilySSF466894.69E-2713110IPR009057Homeodomain-like
SMARTSM007173.6E-111464IPR001005SANT/Myb domain
PfamPF002494.9E-111560IPR001005SANT/Myb domain
CDDcd001671.51E-111762No hitNo description
Gene3DG3DSA:1.10.10.607.0E-1864116IPR009057Homeodomain-like
PROSITE profilePS5129417.54767118IPR017930Myb domain
SMARTSM007177.8E-1268116IPR001005SANT/Myb domain
PfamPF002496.8E-1271111IPR001005SANT/Myb domain
CDDcd001671.42E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQSGGGIPAM AALRKGPWLA EEDEILREYV KNNGPGDWSS IRSKGLLPRT GKSCRLRWVN  60
KLKPHLKSGC KFSPEEERVV IDLQATFGNK WARIATYLPG RTDNDVKNFW STRQKRLARL  120
LQTPLPVKSQ KRQERTPLPP EMPIVQPNVN SGVLLYNPPC SDFIPFTEQY SNIECSPEQM  180
INLDPTTPHL EPAIINSELC VQSSSAPQSP FNHPLLDLPP LPEGQDLIPE FDDMSFLDQF  240
DCEESSQALQ LTAQPTFFDM DVGCPDIKMD IPGTPESIFG DFPADMFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241311625126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578660.10.0transcription factor MYB97-like
TrEMBLA0A200Q2N01e-80A0A200Q2N0_9MAGN; SANT/Myb domain
STRINGXP_008807969.14e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-67MYB family protein