PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_04695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9983.7 Da PI: 10.9825 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 31 | 71 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +eE el++++++++G++ W++ a +g +++ ++k+ w+ PEQU_04695 31 KWEPEELELIKRYHAEHGPK-WRKLADVLG--KSRVHVKDAWRR 71 8*****************99.********8..9*******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.859 | 26 | 77 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 27 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.28E-9 | 28 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-4 | 28 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-9 | 31 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.52E-4 | 31 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MSIAAAALPW RPPVNTFFRA HILFERSEER KWEPEELELI KRYHAEHGPK WRKLADVLGK 60 SRVHVKDAWR RIRLPNLKKG MPSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020578414.1 | 2e-46 | uncharacterized protein LOC110023369 | ||||
TrEMBL | A0A1D1YR75 | 3e-30 | A0A1D1YR75_9ARAE; Cyclin-D-binding Myb-like transcription factor 1 (Fragment) | ||||
STRING | XP_006448813.1 | 2e-29 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5405 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 4e-16 | MYB_related family protein |