PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04617
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 443aa    MW: 45904.4 Da    PI: 7.3255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04617genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12241286555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  PEQU_04617 241 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 286
                 99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.07E-13234290No hitNo description
SuperFamilySSF474595.23E-17234296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16238295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9241286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MPGSSAPSAT AASASHIALH ELSNGSCQPH IQNPNLQGSS SPFDPSAASN DDFFDQMFST  60
IPSWPDLAKS PWDLTNPASA ASGYDESSLL ASRLRQYQIS SGDGGSPVGK SMMLPLSPQQ  120
QQQLLLSAIG GRPSTSDPDS SVLTPLPLSL SAAGHGSDSD ASFKSPNSTV QGLYNGFGSA  180
SLQRSANQPQ HFHQAQGGTM PQQSFGGVPP AGGYLPHPHS GAPAAPRQRV RARRGQATDP  240
HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA  300
AAVAPLVADI SSEVMTFLRV VLPQGGDRRR APPATEHQVA KLMEEDMGSA MQYLQGKGLC  360
LMPISLASAI STASCRGPNS SLLAGSGAVN NLASLIPGIP GAGDAPSSPS LSVLTVQSAV  420
AGGCENDLSR SSGKEGAASV SKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578735.10.0LOW QUALITY PROTEIN: transcription factor bHLH69
TrEMBLA0A2I0W8610.0A0A2I0W861_9ASPA; Transcription factor bHLH66
STRINGPOPTR_0018s11800.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-49LJRHL1-like 1