PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_03442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25835.6 Da PI: 8.056 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.9 | 6.3e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaev +i+fs++gklye++s PEQU_03442 10 RIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 72.9 | 9.4e-25 | 79 | 170 | 6 | 97 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ +e++ ++++q+++ + k+i+ L+ ++R+l+Ge+Les+s++eL++Le++Le+s++k+R +Kn+ll eq+ +l++kek l een L+k+ PEQU_03442 79 NNKSNEQNIQQWKQDSELMSKKIDVLEDSKRKLMGENLESCSVEELHELETELEQSISKVRWRKNHLLEEQVVQLKEKEKVLLEENALLQKQ 170 5668999********************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.55E-42 | 3 | 70 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-32 | 3 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.3E-24 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.355 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009838 | Biological Process | abscission | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0080187 | Biological Process | floral organ senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVRGRTEMRR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIVFSP RGKLYEFASS 60 SMLKTIERYK MNNKEVIDNN KSNEQNIQQW KQDSELMSKK IDVLEDSKRK LMGENLESCS 120 VEELHELETE LEQSISKVRW RKNHLLEEQV VQLKEKEKVL LEENALLQKQ GPHTTLSLWK 180 EPLQGLNTSK EMVPQCDKNM DVETELYVGW PGGGGRTQQL LKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 8e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 8e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 8e-18 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00576 | DAP | Transfer from AT5G62165 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT852838 | 0.0 | KT852838.1 Phalaenopsis hybrid cultivar suppressor of overexpression of CO1 (SOC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020593611.1 | 1e-162 | MADS-box transcription factor 50-like isoform X1 | ||||
Swissprot | Q9XJ60 | 7e-79 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A286JU18 | 1e-158 | A0A286JU18_PHAAO; Suppressor of overexpression of constans1 | ||||
STRING | XP_008783455.1 | 2e-82 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 2e-54 | AGAMOUS-like 19 |