PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_03301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 102aa MW: 11986.7 Da PI: 10.7113 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 78.8 | 8.6e-25 | 2 | 93 | 9 | 97 |
DUF573 9 eeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +D + +LqG+++f+ k+g+ ++++d+ f++ ++ +++f+++k+q++eK rLKkK+++ +k+ sg+ ++++++hdq ++e+s+kiW PEQU_03301 2 HTDGMKVLQGFLEFTLKRGTthtNYQHDTGPFFNEIRPRLQFDFNKNQITEKQCRLKKKYRNAATKMGSGRGFVLKSPHDQATYEISHKIWS 93 68999**************98867777****************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-23 | 2 | 93 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 102 aa Download sequence Send to blast |
THTDGMKVLQ GFLEFTLKRG TTHTNYQHDT GPFFNEIRPR LQFDFNKNQI TEKQCRLKKK 60 YRNAATKMGS GRGFVLKSPH DQATYEISHK IWSTTFFRLG FL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020590480.1 | 1e-54 | probable transcription factor At3g04930 | ||||
Refseq | XP_020673830.1 | 1e-54 | probable transcription factor At5g28040 | ||||
Swissprot | Q9CAV7 | 8e-28 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | A0A2I0WQY5 | 3e-53 | A0A2I0WQY5_9ASPA; Mediator-associated protein 1 | ||||
STRING | XP_008807916.1 | 1e-42 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04930.2 | 8e-31 | DNA-binding storekeeper protein-related transcriptional regulator |