PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03041
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 497aa    MW: 55364.9 Da    PI: 6.3856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03041genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12354400455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PEQU_03041 354 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIGYITDLQ 400
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-4857231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.698350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-14353404No hitNo description
SuperFamilySSF474593.4E-18353412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-10354400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-17354411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGSCCFDRAE AVLSSDWSDQ DQAMAVAVLG LNAFEYLQTS RVSSDSLVCS AGAAADLQTK  60
LINLVESPGG AGWSFAIFWQ ISRFKSGDLV LGWGDGHLRE PEIESLGSLD DVQQKMRKRV  120
LQKLHLLHGG YEDDNYALGL DCVTDTEMFF LASMYFAFPD GEGAPGRALL HRKHIWNDPL  180
SENYCVRAFL AKAAGFRTIV LVPFENGVLE LGSVDVIPES MEALMMIRSV FSKGAEWLKV  240
FGNDLEIERA ERPSGLIANN REAVNWNKNR SFVPQHLKAR NGLAVMRGEV KPKGQGFVHK  300
HQQPSPASKR IDFASHENSD AEASCKEDKP SIIDERRPRK RGRKPANGRE EPLNHVEAER  360
QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIGYITDLQ KRLKEMESRT KMTPDVEVQT  420
GQEELIVQVN CPLDSHPASV VIQAFNELQF TSVESKMSAT DDCVFHTFVV KLPGGTEQAA  480
KEKFFTVISC QMNPSAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-26572329193Transcription factor MYC3
4rqw_B5e-26572329193Transcription factor MYC3
4rs9_A5e-26572329193Transcription factor MYC3
4yz6_A5e-26572329193Transcription factor MYC3
5gnj_A2e-27348408262Transcription factor MYC2
5gnj_B2e-27348408262Transcription factor MYC2
5gnj_E2e-27348408262Transcription factor MYC2
5gnj_F2e-27348408262Transcription factor MYC2
5gnj_G2e-27348408262Transcription factor MYC2
5gnj_I2e-27348408262Transcription factor MYC2
5gnj_M2e-27348408262Transcription factor MYC2
5gnj_N2e-27348408262Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335343RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020581000.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-151MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2I0WU410.0A0A2I0WU41_9ASPA; Transcription factor ABA-INDUCIBLE bHLH-TYPE
STRINGXP_009781532.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-129ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]