PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_02838

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 337aa MW: 38444.2 Da PI: 5.9382

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_02838	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.1	2e-54	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eelv +yLkkkv+++k++l +vi++vd+y++ePwdL+ ++ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ k PEQU_02838 8 VPPGFRFHPTEEELVGYYLKKKVASQKIDL-DVIRDVDLYRIEPWDLQDccRIGYeEQTEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVHD-K 104 69**************************.9***********953433332667*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 + l+g++ktLvfykgrap+g+k+dW+mheyrle PEQU_02838 105 KMLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-59	6	157	IPR003441	NAC domain
PROSITE profile	PS51005	57.766	8	157	IPR003441	NAC domain
Pfam	PF02365	2.7E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:1990110	Biological Process	callus formation
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MDSIESCVPP GFRFHPTEEE LVGYYLKKKV ASQKIDLDVI RDVDLYRIEP WDLQDCCRIG 60 YEEQTEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VHDKKMLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLETEE NGQAQEEGWV VCRAFKKRTN GQTKSFIAHW DSNYNIFPNP 180 NTRLHTTFID QHPNISNPHH LNPKDFFLNQ EMVLPGGLTK LLQCPNAFLQ LPHLESPHPF 240 PLIKTSCSSS VSVNAGSVHE KEGDREGSCA GDQRVTDWRA LDKFVASQLS REDGFVGDCE 300 AGENGSEMAF LLVDDGGEEE GRMKESCVGD VGFCVFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-49	7	162	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-49	7	162	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-49	7	162	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-49	7	162	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-49	7	162	19	173	NAC domain-containing protein 19
3swm_B	6e-49	7	162	19	173	NAC domain-containing protein 19
3swm_C	6e-49	7	162	19	173	NAC domain-containing protein 19
3swm_D	6e-49	7	162	19	173	NAC domain-containing protein 19
3swp_A	6e-49	7	162	19	173	NAC domain-containing protein 19
3swp_B	6e-49	7	162	19	173	NAC domain-containing protein 19
3swp_C	6e-49	7	162	19	173	NAC domain-containing protein 19
3swp_D	6e-49	7	162	19	173	NAC domain-containing protein 19
4dul_A	6e-49	7	162	16	170	NAC domain-containing protein 19
4dul_B	6e-49	7	162	16	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00266	DAP	Transfer from AT2G18060	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596826.1	0.0	NAC domain-containing protein 105-like
Swissprot	Q9SL41	1e-116	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A2I0XGF6	0.0	A0A2I0XGF6_9ASPA; NAC domain-containing protein 7
STRING	VIT_04s0023g03110.t01	1e-136	(Vitis vinifera)
STRING	EOX90892	1e-135	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3625	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	1e-117	vascular related NAC-domain protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]