PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_02584

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRF

Protein Properties

Length: 393aa MW: 43052.2 Da PI: 9.0043

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_02584	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.8	5.1e-25	80	124	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PEQU_02584 80 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 124 79****************************************986 PP
2	QLQ	36.1	2.1e-13	10	43	1	34
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +aFT +Q ++Lk+Q l y y+ an+P+P +Ll PEQU_02584 10 GAFTLSQRMELKQQMLLYNYIWANVPIPTNLLSS 43 59*****************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	0.005	10	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.4E-8	11	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	16.056	11	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.954	80	124	IPR014977	WRC domain
Pfam	PF08879	2.3E-21	81	123	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MQRALRGPMG AFTLSQRMEL KQQMLLYNYI WANVPIPTNL LSSLMRGLNP AWFSACSSGS 60 LRPNAAWWGY FHPGYVGNAD PEPGRCRRTD GKKWRCSRDA VPDQKYCERH INRGRHRSRK 120 PVEGQGDHAK RAISGVTNPT SVSPVTSGIS QGTANASSSQ FWLPAGGNTT NDHKDAARDL 180 PILTSTAKPY NTLFTTSKNY DPLSETSSLK LNSCSPFKSH LRGSFLANNS LVTPLDLHDQ 240 QSQQPHGLDH FINNWPPCRP ESSNLIWPVV EETQAERTQL AMPFHLASSD FSSSTSSPAP 300 ERLSPLHMGL GLMGVQNERN SVMKWRATSM GGPLGEVLTS TSSTPVDENK NFLSLINEGW 360 DLTPQLASST NNVIQSATVS SVSSGSANDV KVE

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MQRALRGPMG AFTLSQRMEL KQQMLLYNYI WANVPIPTNL LSSLMRGLNP AWFSACSSGS  60
LRPNAAWWGY FHPGYVGNAD PEPGRCRRTD GKKWRCSRDA VPDQKYCERH INRGRHRSRK  120
PVEGQGDHAK RAISGVTNPT SVSPVTSGIS QGTANASSSQ FWLPAGGNTT NDHKDAARDL  180
PILTSTAKPY NTLFTTSKNY DPLSETSSLK LNSCSPFKSH LRGSFLANNS LVTPLDLHDQ  240
QSQQPHGLDH FINNWPPCRP ESSNLIWPVV EETQAERTQL AMPFHLASSD FSSSTSSPAP  300
ERLSPLHMGL GLMGVQNERN SVMKWRATSM GGPLGEVLTS TSSTPVDENK NFLSLINEGW  360
DLTPQLASST NNVIQSATVS SVSSGSANDV KVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571749.1	0.0	growth-regulating factor 6-like
TrEMBL	A0A2I0XDX1	0.0	A0A2I0XDX1_9ASPA; Growth-regulating factor 6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-54	growth-regulating factor 2