PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_02358
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 416aa    MW: 46095.2 Da    PI: 7.2413
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_02358genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10140203155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.....kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g     ++    + +g ++ +e+A +a++ a++k++g
  PEQU_02358 140 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsrkgRQelNIVKIGGYDREEKAGRAYDLAALKYWG 203
                 57*******************666664467655338**************************98 PP
2AP247.74e-15246297155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PEQU_02358 246 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 297
                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.37E-16140213No hitNo description
PfamPF008471.9E-8140203IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-13140213IPR016177DNA-binding domain
SMARTSM003804.2E-19141217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-11141212IPR001471AP2/ERF domain
PROSITE profilePS5103216.239141211IPR001471AP2/ERF domain
PRINTSPR003671.5E-6142153IPR001471AP2/ERF domain
CDDcd000183.08E-24246307No hitNo description
SuperFamilySSF541715.23E-18246307IPR016177DNA-binding domain
PfamPF008475.0E-10246297IPR001471AP2/ERF domain
PROSITE profilePS5103219.045247305IPR001471AP2/ERF domain
SMARTSM003801.8E-33247311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18247306IPR001471AP2/ERF domain
PRINTSPR003671.5E-6287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEYSSQNWLA FSLSPHPGGL YEAFSYTTPG TFTLPLSFLS LSLLRHLGFV RTVEEDGVGS  60
VEPKLEDFLG GGGSGGADIS NKGVIFESDL KAVAAGFLFG TAAGVFGRAA EEPPEQQMME  120
ISATVAESKK AVDKFGHRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQELNIVK  180
IGGYDREEKA GRAYDLAALK YWGPTTTTNF PVSDYEKELE EMKSMTRQEF VASLRRKSSG  240
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA  300
VTNFDMSRYN VNTITHTDLP IGSMPARSFK ASDTNTTPPS SSSDTIMAVQ DHPHQHLDGD  360
YWSLLALHNQ YNQQSNSSVF GGSFEGSSFA PSSSHYYYQP AKPNVCVFQT PIYGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585162.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-127AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM9QXK81e-167M9QXK8_9ASPA; AP2-8
STRINGXP_008803593.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-120AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]