PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_01570

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 325aa MW: 37518 Da PI: 6.924

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_01570	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.4	5.9e-49	10	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+v+yL+k+++ ++i+ +diyk++PwdLp+k+ +++ewyfFs+r++ky++g r+nra+ sgyWkatg+dk + s +g + PEQU_01570 10 LPPGFRFHPTDEELIVHYLRKRTAPV-----SIIAAIDIYKFDPWDLPEKAVFGDREWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKFIRS-GGDN 102 79***************9987643.....4699*********8878899***********************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykg+ pkg ktdW+mheyr+ PEQU_01570 103 VGVKKALVFYKGKPPKGLKTDWIMHEYRV 131 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-60	5	166	IPR003441	NAC domain
PROSITE profile	PS51005	55.894	10	166	IPR003441	NAC domain
Pfam	PF02365	5.0E-26	11	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
LAMYNPATQL PPGFRFHPTD EELIVHYLRK RTAPVSIIAA IDIYKFDPWD LPEKAVFGDR 60 EWYFFSPRER KYPNGVRPNR AAVSGYWKAT GTDKFIRSGG DNVGVKKALV FYKGKPPKGL 120 KTDWIMHEYR VAESLNTTNS YRPLSMRLTD DSMRLDDWVL CRIYKKSKHV SPPLIDREHE 180 DSSTDDASFP IQNLPLRQPL QDFPKTSSVS EALEDFSQLF NGFYSLHDLQ RFDKNPLIGH 240 PISSLQQTNH DSNDSNGHFL PQLSQKEPSD SINLKNQKHD EMDSKEEING TFQNFYGQFD 300 SSDYSFPNQQ FLRLPQPINS HLGLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-69	5	166	13	168	NAC domain-containing protein 19
3swm_B	9e-69	5	166	13	168	NAC domain-containing protein 19
3swm_C	9e-69	5	166	13	168	NAC domain-containing protein 19
3swm_D	9e-69	5	166	13	168	NAC domain-containing protein 19
3swp_A	9e-69	5	166	13	168	NAC domain-containing protein 19
3swp_B	9e-69	5	166	13	168	NAC domain-containing protein 19
3swp_C	9e-69	5	166	13	168	NAC domain-containing protein 19
3swp_D	9e-69	5	166	13	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020589580.1	0.0	NAC transcription factor 47-like
Swissprot	K4BNG7	6e-83	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A2I0VJH7	1e-162	A0A2I0VJH7_9ASPA; NAC transcription factor 29
STRING	XP_008793367.1	1e-107	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-83	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]