PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_01461
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 560aa    MW: 63517.4 Da    PI: 6.6079
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_01461genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP66.55.6e-212443577
                ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP 35 vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                ++g+e+r+CqqC++fh l +fDe+krsCrr+L+khn+rrr+k 
  PEQU_01461  2 LDGEEKRYCQQCGKFHVLLDFDEGKRSCRRKLEKHNRRRRRKP 44
                6799***********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114119.119143IPR004333Transcription factor, SBP-box
PfamPF031103.6E-14243IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-18246IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.7E-11230IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MLDGEEKRYC QQCGKFHVLL DFDEGKRSCR RKLEKHNRRR RRKPADSNNV VEKENLSQAE  60
LQENVFRDSD QIQGTPEAYA CKAVDNGESN NLVDGEMFLD CENGNGFPGC SFTGVEQAQT  120
KSPLLFAASA EARVDDRKDH PQSAFSSTSC DKKASYSSMC PTGRISFKLY DWNPAEFPRR  180
LRLQIFQWLA SMPVELEGYI RPGCTILTVF IAMPQHMWEK LSKDGALYVK HLVNSSESLL  240
SGRGNILIYL SSMIVHVLKD GTSHIKMEVN APRLHYVHPT YFEAGKAVEF FACGSNLDQP  300
KLRFLVSFAG KYLACDAYRV ISNEKLRYYG VNSLVSSSNC EYEVFRINIK QTTPDIFGPA  360
FIEVENESGI SNFIPILIGD EQVCSELNKM QGALTFYPNV HEHNSISNAV LANAAISEIN  420
VTISDLLVDI AWLLREPCKD YNESLLGSLN VQRLKYILQF SMQNELITVL KAILKYVGIM  480
IHEAGFQNSE NLTVSADFDE LLEFMKTAKE FLDQRIQHKE RSKLDHRHSN FMETVPINLV  540
KNTMVIMPPT NLVRAQLPSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-221503887squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12543KRSCRRKLEKHNRRRRRKP
22941RRKLEKHNRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576508.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A2I0XD280.0A0A2I0XD28_9ASPA; Squamosa promoter-binding-like protein 9
STRINGXP_008809291.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-120squamosa promoter binding protein-like 7