PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_00296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | SRS | ||||||||
Protein Properties | Length: 257aa MW: 27992.3 Da PI: 7.6754 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 88.2 | 1.9e-27 | 68 | 127 | 3 | 62 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 +g ++CqdCG qa+k+C+h+RC+ CCk+rgf C+thvkstWvpaakrr+r q+la +s+ PEQU_00296 68 NGLITCQDCGIQARKNCSHMRCQVCCKNRGFYCQTHVKSTWVPAAKRRQRNQKLAGGESS 127 57789*********************************************9999876554 PP | |||||||
2 | DUF702 | 73.3 | 7.4e-23 | 134 | 185 | 104 | 152 |
DUF702 104 s...lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + +P+ev +avfrcvrv+ +d+ ee+laYqtavsi GhvfkG+LydqG+ PEQU_00296 134 QgviFPAEVTLPAVFRCVRVRQMDETEEQLAYQTAVSIKGHVFKGLLYDQGP 185 2344***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.1E-23 | 71 | 127 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.7E-21 | 72 | 114 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 3.6E-20 | 137 | 185 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.5E-21 | 138 | 185 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAGFYLGGSG DGYGYQRGDE QESFFFYNRT RREGQPIWQQ QEQLFSVPSG SLLAFGSGGD 60 ELAGEYRNGL ITCQDCGIQA RKNCSHMRCQ VCCKNRGFYC QTHVKSTWVP AAKRRQRNQK 120 LAGGESSRRA VGDQGVIFPA EVTLPAVFRC VRVRQMDETE EQLAYQTAVS IKGHVFKGLL 180 YDQGPVLSSA ENQMHLAGEC LSGGAAVTAG GFAPGMDIGG RTAVGGDFET DSSSMYPNPV 240 GAFMTGTLFF SQQTQKH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020599954.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9XGX0 | 3e-47 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A2I0VXS7 | 1e-111 | A0A2I0VXS7_9ASPA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-49 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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