PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s992641g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 29139.9 Da PI: 10.667 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.6 | 4e-17 | 24 | 103 | 14 | 99 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + l +p kf +h +++++ + t+ ++ g+ W v+l ++ ++++++++GW++F++a+gL +g f+vF ++g++ f ++k+f++ PDK_30s992641g001 24 KKLLIPPKFR-QHlANDNHG--EATILSPLGKFWHVNL--QREGREMFFGSGWEDFANAHGLSVGHFLVFLYQGNMVF--TIKIFEN 103 3489*****7.664555333..8999************..**********************************9*99..9999976 PP | |||||||
2 | B3 | 55.4 | 1.1e-17 | 164 | 251 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ++ +s r+ +pk f+ ++g+ +++ ++tl+d++ r W + r +s++ ++++GW+ F + n+LkegD ++F+l++ ++ ++v++ PDK_30s992641g001 164 IVRLYNVTSMRMAVPKAFCLSNGLTTKC--EITLKDRKQRLWPALF--RLGSREGYIGRGWRCFSEGNDLKEGDKCIFELVS--KKVMRVRI 249 56789999***************99777..8***************..88999989***********************986..45468888 PP E- CS B3 97 fr 98 +r PDK_30s992641g001 250 VR 251 77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-22 | 10 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 10 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.043 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.02E-18 | 12 | 101 | No hit | No description |
SMART | SM01019 | 2.7E-16 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-15 | 24 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-20 | 156 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-20 | 157 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-15 | 159 | 251 | No hit | No description |
PROSITE profile | PS50863 | 14.001 | 160 | 252 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.8E-13 | 161 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-15 | 163 | 252 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MATRRSQGAH RPAFFKVLLL ESFKKLLIPP KFRQHLANDN HGEATILSPL GKFWHVNLQR 60 EGREMFFGSG WEDFANAHGL SVGHFLVFLY QGNMVFTIKI FENSGCLKEY GSTASKFADK 120 KEVNLDDEIL DDAPKDIAVE KGRSKSSRRK CPNRRKRVPY FERIVRLYNV TSMRMAVPKA 180 FCLSNGLTTK CEITLKDRKQ RLWPALFRLG SREGYIGRGW RCFSEGNDLK EGDKCIFELV 240 SKKVMRVRIV RR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008797610.1 | 1e-169 | putative B3 domain-containing protein Os06g0632500 | ||||
TrEMBL | A0A2H3YF61 | 1e-167 | A0A2H3YF61_PHODC; putative B3 domain-containing protein Os06g0632500 | ||||
STRING | XP_008797610.1 | 1e-168 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 7e-24 | B3 family protein |