PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s989431g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 17918.7 Da PI: 10.4424 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 6.1e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k+ rqv+fskRr g+lKKA+EL vLCdaev +++fss+gklye++s PDK_30s989431g002 10 RIEDKTSRQVSFSKRRSGLLKKANELAVLCDAEVGLLVFSSKGKLYEFAS 59 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.29E-35 | 3 | 61 | No hit | No description |
PRINTS | PR00404 | 6.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-28 | 3 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MVRGRVELRR IEDKTSRQVS FSKRRSGLLK KANELAVLCD AEVGLLVFSS KGKLYEFAST 60 SRKWLSNNFS NYKCFQIELK KIEIKENEWM RGHSVWGDHP KIKGDVGGGD EITAFGCTTV 120 ILRGGDPKSP PLLKSPPNSV MGYPSLRSKI QDHPRAVILG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 4e-17 | 3 | 72 | 2 | 71 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 4e-17 | 3 | 72 | 2 | 71 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 4e-17 | 3 | 72 | 2 | 71 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 4e-17 | 3 | 72 | 2 | 71 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3mu6_A | 3e-17 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-17 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-17 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-17 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 4e-17 | 1 | 60 | 1 | 60 | MEF2C |
6byy_A | 5e-17 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 5e-17 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 5e-17 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 5e-17 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-28 | AGAMOUS-like 21 |