PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s988751g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 18901.4 Da PI: 9.4144 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.5e-05 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cgk F++ L H ++H PDK_30s988751g004 79 YKCSVCGKAFPSYQALGGHKSSH 101 9*************999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.3E-13 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 79 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.52E-9 | 79 | 101 | No hit | No description |
PROSITE profile | PS50157 | 10.762 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.52E-9 | 132 | 159 | No hit | No description |
Pfam | PF13912 | 8.8E-12 | 136 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.286 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MALQAPLDSA PSPAALKPAQ EALPWAQEKR SKRHPSSPLQ TQEEYLALCL VMLARGDGHR 60 QPSPSPPPPA SPPSRKLCYK CSVCGKAFPS YQALGGHKSS HRRPTGIEDV RLFSSFAGSG 120 SVSSGGSGGG SEGGRVHRCS VCFRSFPTGQ ALGGHKRCHY WEVSSSVVEL GCHFERF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | Transfer from AT3G49930 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787218.1 | 1e-116 | zinc finger protein ZAT6 | ||||
TrEMBL | A0A2H3XQF1 | 1e-114 | A0A2H3XQF1_PHODC; zinc finger protein ZAT6 | ||||
STRING | XP_008787218.1 | 1e-115 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 2e-37 | C2H2 family protein |