PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s983711g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 168aa MW: 18369.1 Da PI: 10.1667 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57 | 2.4e-18 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie k r v fskRr+g++ KA+EL +LC+++v v+ fs+ g+ y++ PDK_30s983711g007 15 KKIEKKAARDVAFSKRRAGMFSKASELATLCGVDVGVVAFSPAGRPYTF 63 68*********************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.806 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-25 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-22 | 8 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-22 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.05E-21 | 23 | 66 | No hit | No description |
PRINTS | PR00404 | 8.0E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAERKFRGRQ KIEIKKIEKK AARDVAFSKR RAGMFSKASE LATLCGVDVG VVAFSPAGRP 60 YTFGYPDANV MMDLLSAGRE KRAVLEERLN SESEDPEDRA WPEDLEGLGL ERLARMVRGF 120 EEQRAKARLR VLQIQEQGGS SAGPSAMAVI PMRAAGFGAP GGSGPWIN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790449.1 | 1e-101 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2H3XY02 | 1e-100 | A0A2H3XY02_PHODC; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_008790449.1 | 1e-101 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50870 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-20 | AGAMOUS-like 61 |