PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s979371g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 485aa MW: 54662.2 Da PI: 6.5439

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s979371g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.3	1.7e-20	58	113	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k PDK_30s979371g001 58 KKRYHRHTSRQIQAMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 113 688999***********************************************998 PP
2	START	90.2	4.2e-29	268	448	5	163
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 +aa++l+++ +ep+Wv+ e ++ +e++++f +++ea r+s++v+m++ +lv +ld + +W e ++ PDK_30s979371g001 268 TAADQLLRMCHTNEPLWVRNGsiakEVLDLEEYTRTFH---WpmdlkqhqnghFRTEATRDSALVIMNSITLVDAFLDAN-KWMELFPsivs 355 78999***********99866666666666766663...1456788889999**********************.******9 PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 ka t++ i+ g g l+lm+ael ++splv+ R+ +f Ry+ q +++g+wvivd vd + + ++ R +++pSg++i++++ng+ PDK_30s979371g001 356 KARTVQIITAGisghgnGSLHLMQAELHFPSPLVAsREAYFFRYCHQnSEEGTWVIVDFPVDGFHDSL-DVPFPRYRRRPSGCVIQDMPNGY 446 **********************************************************999976.99******************* PP EE CS START 162 sk 163 sk PDK_30s979371g001 447 SK 448 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-21	43	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.59E-19	46	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	55	115	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	56	119	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-18	58	113	IPR001356	Homeobox domain
CDD	cd00086	4.71E-19	58	116	No hit	No description
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	29.602	255	485	IPR002913	START domain
SuperFamily	SSF55961	5.91E-22	257	448	No hit	No description
CDD	cd08875	3.29E-85	259	472	No hit	No description
SMART	SM00234	1.7E-8	264	485	IPR002913	START domain
Pfam	PF01852	4.9E-22	268	448	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MAVSAVLQKE EGAMVMGRGG GKEEEMESGS GSGHVDGISC GEEQDNEQQQ QLQPPAKKKR 60 YHRHTSRQIQ AMEALFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAHQDRQD 120 NVLLRAENES LKNENFRLQA AIRNVVCPNC GGPAILGEMS FDEQHLRIEN ARLKDEMIGL 180 FASICSWSVY LASHHDMAAP VQPLGPAPLL LPSLDLDMGI YSRHFNEPPI VSCCDMIPVP 240 PISDGHQPFS GTLIMDQDKP SVLDLTMTAA DQLLRMCHTN EPLWVRNGSI AKEVLDLEEY 300 TRTFHWPMDL KQHQNGHFRT EATRDSALVI MNSITLVDAF LDANKWMELF PSIVSKARTV 360 QIITAGISGH GNGSLHLMQA ELHFPSPLVA SREAYFFRYC HQNSEEGTWV IVDFPVDGFH 420 DSLDVPFPRY RRRPSGCVIQ DMPNGYSKKV DSDSVHSHVK YVVTQNCGAF GAYIFIPSIK 480 QTCVQ

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MAVSAVLQKE EGAMVMGRGG GKEEEMESGS GSGHVDGISC GEEQDNEQQQ QLQPPAKKKR  60
YHRHTSRQIQ AMEALFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAHQDRQD  120
NVLLRAENES LKNENFRLQA AIRNVVCPNC GGPAILGEMS FDEQHLRIEN ARLKDEMIGL  180
FASICSWSVY LASHHDMAAP VQPLGPAPLL LPSLDLDMGI YSRHFNEPPI VSCCDMIPVP  240
PISDGHQPFS GTLIMDQDKP SVLDLTMTAA DQLLRMCHTN EPLWVRNGSI AKEVLDLEEY  300
TRTFHWPMDL KQHQNGHFRT EATRDSALVI MNSITLVDAF LDANKWMELF PSIVSKARTV  360
QIITAGISGH GNGSLHLMQA ELHFPSPLVA SREAYFFRYC HQNSEEGTWV IVDFPVDGFH  420
DSLDVPFPRY RRRPSGCVIQ DMPNGYSKKV DSDSVHSHVK YVVTQNCGAF GAYIFIPSIK  480
QTCVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663260.1	0.0	homeobox-leucine zipper protein ROC3
Swissprot	A2ZAI7	1e-172	ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A3Q0ICG5	0.0	A0A3Q0ICG5_PHODC; homeobox-leucine zipper protein ROC3
STRING	XP_008800084.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7846	34	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	1e-129	homeobox-7