PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s973861g013
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10852.7 Da    PI: 9.5778
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s973861g013genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.61.4e-32958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ 
  PDK_30s973861g013  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58
                       79**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.6E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.403161IPR002100Transcription factor, MADS-box
CDDcd002653.00E-41263No hitNo description
SuperFamilySSF554551.12E-30262IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSV  60
GLQTSDLILC HFYAKMDGYP AVTFALCSLL PVHEQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21162162MEF2C
5f28_B8e-21162162MEF2C
5f28_C8e-21162162MEF2C
5f28_D8e-21162162MEF2C
6byy_A8e-21162162MEF2 CHIMERA
6byy_B8e-21162162MEF2 CHIMERA
6byy_C8e-21162162MEF2 CHIMERA
6byy_D8e-21162162MEF2 CHIMERA
6bz1_A8e-21162162MEF2 CHIMERA
6bz1_B8e-21162162MEF2 CHIMERA
6bz1_C8e-21162162MEF2 CHIMERA
6bz1_D8e-21162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389276.18e-36PREDICTED: MADS-box transcription factor 6
SwissprotP293862e-36AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLA0A199UL701e-36A0A199UL70_ANACO; MADS-box transcription factor 17
STRINGBra004927.1-P3e-35(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.19e-39AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]