PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s972061g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 273aa MW: 30806.7 Da PI: 8.7552

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s972061g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.9	3.5e-15	46	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+++++ ++ +r+klk+++We+v++++ + ++p+qCk+k e+++kry+ + + ++ s++p+f +l+ PDK_30s972061g001 46 EWSEGAVASLLDVYEAKWVLRNRAKLKGHDWEDVARVVaaqsGSARPAKTPTQCKNKVESMKKRYRSESAAGGR------SRWPLFARLD 129 5***********************************84433333356****************9998887......5799999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-19	44	129	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEGNLQQVDN NANNPSLAAV GVDDSKEEEE HARVVGPGSD RSKRDEWSEG AVASLLDVYE 60 AKWVLRNRAK LKGHDWEDVA RVVAAQSGSA RPAKTPTQCK NKVESMKKRY RSESAAGGRS 120 RWPLFARLDG LVRCRSPTTA LVSVDRPPGR PAPSSHSPEP NVAAVAKQAE CEETKGKEHV 180 NEIHKEHCNM QPYDPCDGKQ KINDRKKRRM REREEKESWK VMESIQWLAE VALRVEQGRM 240 EAMREVERMR ALIVPRQNIN FSCHSACSCF HAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	210	RKKRRMR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803366.2	0.0	uncharacterized protein LOC103716939
TrEMBL	A0A2H3YTE6	0.0	A0A2H3YTE6_PHODC; uncharacterized protein LOC103716939
STRING	XP_008803366.1	1e-148	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-41	sequence-specific DNA binding transcription factors