PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s970651g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 624aa    MW: 69448.2 Da    PI: 7.1407
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s970651g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.6e-085585951954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  PDK_30s970651g001 558 FHNflHPYPKDDEKHLLALKSGLTRSQVSNWFINARVR 595
                        776679******************************88 PP
2BELL52.21.5e-174434971872
               BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        ++d rY+q+ +q+q vis+F+ +++  + ++++++Al++iS ++++L+++i+++i
  PDK_30s970651g001 443 QIDCRYNQCLDQIQNVISAFNKATESVTPQLHAHFALHTISVNYKNLRERITSRI 497
                        7899***********************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-5306495IPR006563POX domain
PfamPF075261.4E-24311494IPR006563POX domain
PROSITE profilePS5007111.499536599IPR001356Homeobox domain
SMARTSM003892.8E-5539603IPR001356Homeobox domain
SuperFamilySSF466893.34E-15539607IPR009057Homeodomain-like
CDDcd000862.84E-11539600No hitNo description
Gene3DG3DSA:1.10.10.602.1E-25542605IPR009057Homeodomain-like
PfamPF059205.2E-14556595IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MENDVFNASL QKTDHNHMDI DAVTSDIFSG PFIQSGMIDY DSHEQMICGN ILYPTLPEEV  60
QNNPYITNHG AISNYASRGD ASFEDSIGKT GQRIGASVSA TSLAYLLPGS HSLQEDLTGL  120
GVSSASPLGE IRALSRDCCN TFGTQDVARF SRPKVDANMN GKLDYGWNCD GTPDHRVPSS  180
RTSIVHPSYH VKGRSEPGWD SNASTITSDH LPSSCVPNNE LSLRLGSYQT SMMNMLNAPD  240
RCSELSCSKL TQVSSKDGEN PDASGLQDSF RVFCSSQNVS VGMALGLAQT FATGEELSLY  300
RNSSPFYFPR VLLGSRYLYI GQQILAEVAS YAELDGLFGG IKGEARMPFS SSCSSERGIV  360
SVGCHEFPLS SGGTKSQDHM DRQQRLETEK EKSQLLVMLQ RVSLIACASK RPVNLSQCIV  420
TCQRIFGTVH LVLGFCHVVG RTQIDCRYNQ CLDQIQNVIS AFNKATESVT PQLHAHFALH  480
TISVNYKNLR ERITSRILFT GQQLSSKCTK EQEKTLESSL IQKQWAWALQ QMREDQQSWR  540
PQRGLPEKSV SVLRAWMFHN FLHPYPKDDE KHLLALKSGL TRSQVSNWFI NARVRLWKPM  600
IEEMYLEFSK MNRNGVTGAD SRSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-15545602158Homeobox protein Meis1
4xrs_B8e-15545602158Homeobox protein Meis1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699307.10.0homeobox protein ATH1-like isoform X1
TrEMBLA0A2H3ZS820.0A0A2H3ZS82_PHODC; homeobox protein ATH1-like isoform X1
STRINGXP_008795472.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-68homeobox gene 1