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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PDK_30s964801g001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 304aa MW: 34102.5 Da PI: 11.1642 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 95.7 | 5.4e-30 | 148 | 204 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
d p++VNaKQ+++Il+RRq+Rak+++e+kl +k rkpylheSRh hA+rR+R+sgGrF
PDK_30s964801g001 148 DGPIFVNAKQFHGILRRRQARAKAKRENKL-TKVRKPYLHESRHLHAMRRARSSGGRF 204
57****************************.**************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00521 | 1.4E-33 | 146 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 35.555 | 147 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 2.5E-22 | 150 | 172 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 4.1E-27 | 150 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 2.5E-22 | 181 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 304 aa Download sequence Send to blast |
MKQCYSTVFL IDFKKRGGNI RPLGKEAQVC SCLSTGSKRD AIFEEATART IRDFDRTFET 60 IICQRSAISQ QMTKVTKICH NPNAVTKVRR TGTGRRTGGR PDRSGTTLYQ DGIGMESNSE 120 IANLDHRSWQ QRWSRHGRML LPLNMAADGP IFVNAKQFHG ILRRRQARAK AKRENKLTKV 180 RKPYLHESRH LHAMRRARSS GGRFLNTTKE GTGQGGNINA RVRDEVPPAR SAACPSTEIL 240 RSDSGNINSA SGSSSISGSE VTSMYAREHN HFQPLTVHLQ ESTRHRKPDF PTSKATEHQY 300 LAAE |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4awl_A | 4e-17 | 148 | 212 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
| 4g91_A | 3e-17 | 148 | 205 | 2 | 60 | HAPB protein |
| 4g92_A | 3e-17 | 148 | 205 | 2 | 60 | HAPB protein |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2307 | 37 | 90 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G14020.1 | 9e-23 | nuclear factor Y, subunit A6 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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