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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PDK_30s946681g001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | G2-like | ||||||||
| Protein Properties | Length: 276aa MW: 30619.2 Da PI: 8.0075 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 50.7 | 3.9e-16 | 16 | 45 | 25 | 54 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYR 54
kAtPk +l++m+v gLt++hvkSHLQ+YR
PDK_30s946681g001 16 SKATPKLVLQMMDVRGLTISHVKSHLQMYR 45
79**************************** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 5.2E-15 | 9 | 49 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 7.17E-6 | 9 | 47 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.4E-11 | 9 | 45 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 276 aa Download sequence Send to blast |
MGNCGRNGAV RQYIRSKATP KLVLQMMDVR GLTISHVKSH LQMYRGMRND MGRQELQARQ 60 HSCETNDGGA DEQDDYDSCP SSKPTKEFQS QLTARMETQA NSKSLQCSKG MGERVTSPYC 120 VDDYMQAMAV GRGIKEEGFR WQKDALHTGL LADHHPSKLK VSGHMVEESG TLKTSIPSDK 180 NLISAKKLKS DRSYENECQS YSSLPFNELS EEREEVNDWS LSLSLSLHPK QRSNKPSASE 240 SSGVISSSSR RNFGDCSGYS GSPRINLDLS MSICGS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_026664681.1 | 1e-137 | myb family transcription factor PHL8 isoform X3 | ||||
| TrEMBL | A0A3Q0ICF2 | 1e-135 | A0A3Q0ICF2_PHODC; myb family transcription factor PHL8 isoform X3 | ||||
| STRING | XP_008805079.1 | 1e-138 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2966 | 35 | 83 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G14600.1 | 1e-14 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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