PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s939421g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 282aa MW: 30970.4 Da PI: 9.8607 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 24 | 44 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ PDK_30s939421g005 24 QYYLKTGTCKFGATCKFHHPK 44 59*****************96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.1e-12 | 66 | 90 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ PDK_30s939421g005 66 EKECAYYLRTGQCKFGNTCKFHHPQ 90 679********************97 PP | |||||||
3 | zf-CCCH | 42.4 | 1.2e-13 | 226 | 251 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ PDK_30s939421g005 226 DQPECQFYMKTGDCKFGAACKFHHPK 251 689*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.427 | 17 | 45 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 18 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-5 | 24 | 46 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-8 | 24 | 44 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 25 | 43 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-7 | 62 | 91 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 66 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 69 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.647 | 224 | 252 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-11 | 226 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 230 | 252 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGLQLPYKSK QKKEKGGERK KVVQYYLKTG TCKFGATCKF HHPKDKAGIF GRAPLNVLGY 60 PIRPNEKECA YYLRTGQCKF GNTCKFHHPQ PSNAMVSLRG SPVYPPVSPA SPGQQSYPGG 120 LTSWPLSSAS FIPSPRWQGP SSYAQLILPQ GLVQVPSWNA YPGHLGSVSS SESQQQTPGT 180 VQMYGSSRPS ETSMGVQGTI SSYRSSSTPM GQYALQRDSV FPERPDQPEC QFYMKTGDCK 240 FGAACKFHHP KERLVPAPNC VLSPLGLPLR PNYLVPLTFS CI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 20 | KSKQKKEKGGERKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661839.1 | 1e-172 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 1e-126 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A3Q0I4T9 | 1e-171 | A0A3Q0I4T9_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
STRING | XP_008794629.1 | 1e-171 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 2e-90 | zinc finger protein 1 |