PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s937281g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 293aa    MW: 32456.1 Da    PI: 9.8438
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s937281g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.5e-49121371128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+v+yL++ v +++++l  +i e+d+yk++Pw Lp k+  +ekewyfFs+r++ky++g+r+nr++ sgyWkatg+dk +
  PDK_30s937281g002  12 LPPGFRFHPTDEELLVHYLCRIVFREPFSL-PIIGEIDLYKFDPWVLPGKALFGEKEWYFFSPRERKYPNGSRPNRVAGSGYWKATGTDKVI 102
                        79**************************99.88***************8777899*********************************9999 PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +g++ g kk Lvfy grapkg+kt+W+mheyrl
  PDK_30s937281g002 103 AP-GGRKLGKKKALVFYVGRAPKGSKTNWIMHEYRL 137
                        98.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-634175IPR003441NAC domain
PROSITE profilePS5100557.94612175IPR003441NAC domain
PfamPF023654.5E-2513137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MESNELVSQL WLPPGFRFHP TDEELLVHYL CRIVFREPFS LPIIGEIDLY KFDPWVLPGK  60
ALFGEKEWYF FSPRERKYPN GSRPNRVAGS GYWKATGTDK VIAPGGRKLG KKKALVFYVG  120
RAPKGSKTNW IMHEYRLCDA APSASNSTKR QHTAATTVPN PRRLDQWVLC RIYRKSCGAQ  180
HQKPFALNAR GQTHVAAAPS THSGIHCCQS KLDQLIANPI MDPYRSHGVQ DSTAVPPLCH  240
VDSTSKVFGG SCVDAELALL LPASAPAATA RKSMPERYGG DRTGDPSTPP ATR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-8211809173NAC domain-containing protein 19
3swm_B5e-8211809173NAC domain-containing protein 19
3swm_C5e-8211809173NAC domain-containing protein 19
3swm_D5e-8211809173NAC domain-containing protein 19
3swp_A5e-8211809173NAC domain-containing protein 19
3swp_B5e-8211809173NAC domain-containing protein 19
3swp_C5e-8211809173NAC domain-containing protein 19
3swp_D5e-8211809173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00360DAPTransfer from AT3G15500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696508.20.0NAC domain-containing protein 72-like
RefseqXP_026663273.10.0NAC domain-containing protein 72
SwissprotA0A3Q7HH643e-84JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A2H3ZK210.0A0A2H3ZK21_PHODC; NAC domain-containing protein 72
STRINGXP_008800136.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.15e-85NAC domain containing protein 3
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]