PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s934911g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 356aa MW: 40730.1 Da PI: 7.1773

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s934911g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.3	1.1e-22	84	177	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 +fY+eYAk++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k++ +w+vt ++++HnHe PDK_30s934911g004 84 EFYSEYAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPTKAPNDSKPQRNRKSSRCGCQAYMRISKSTdmgVTEWRVTGFSNHHNHE 175 6************999887735667799*********9999999*****************99777789*********** PP FAR1 89 la 90 l PDK_30s934911g004 176 LL 177 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-19	84	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-7	300	352	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAVAFRFGGV GFLPSYYSDA KVMSAEARAM LDVYDDPSEQ RSLSLDDTSS AEESPEDTRL 60 SLETSIDAIP YIGQRFVTHD AAYEFYSEYA KRCGFSIRRH RTEGKDGIGK GLTRRYFVCH 120 RAGNTPTKAP NDSKPQRNRK SSRCGCQAYM RISKSTDMGV TEWRVTGFSN HHNHELLEPN 180 QVRFLPAYRT ISDADKNRIL MFAKSGISVQ QMMRLMELEK CVEPGYLPFT EKDVRNLIQS 240 FKKVDQDEES IDLLKMCRNI KEKDPNFKYD FTIDADNRLE NIAWSYSSSV QSYEIFGDAV 300 VFDTTHRLTA FDMPLGIWVG MNNYGMPCFH GCVLLREENV RSFSWALKVK LQNAVA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAVAFRFGGV GFLPSYYSDA KVMSAEARAM LDVYDDPSEQ RSLSLDDTSS AEESPEDTRL  60
SLETSIDAIP YIGQRFVTHD AAYEFYSEYA KRCGFSIRRH RTEGKDGIGK GLTRRYFVCH  120
RAGNTPTKAP NDSKPQRNRK SSRCGCQAYM RISKSTDMGV TEWRVTGFSN HHNHELLEPN  180
QVRFLPAYRT ISDADKNRIL MFAKSGISVQ QMMRLMELEK CVEPGYLPFT EKDVRNLIQS  240
FKKVDQDEES IDLLKMCRNI KEKDPNFKYD FTIDADNRLE NIAWSYSSSV QSYEIFGDAV  300
VFDTTHRLTA FDMPLGIWVG MNNYGMPCFH GCVLLREENV RSFSWALKVK LQNAVA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930511.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_019708337.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_029122508.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2H3ZIK2	0.0	A0A2H3ZIK2_PHODC; protein FAR1-RELATED SEQUENCE 11
STRING	XP_008776582.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]