PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s929832g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 430aa    MW: 47488.4 Da    PI: 4.785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s929832g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2201.2e-678642517371
               GRAS  17 lelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
                        ++la+ lLa  + l   +  d++p+++la yf+++L+ar ++   +  + +p+ +      s+ ++a+++++e+sP++kf+h++aNqaIlea
  PDK_30s929832g001  86 NSLADLLLASAKALllgREMDANPLNQLAYYFAQGLRARTND--LGANDVFPVHSM----ASDGMSAYQMLQELSPYVKFGHFAANQAILEA 171
                        55667777777666666778899******************9..666666666666....58999*************************** PP

               GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                        +eg+++v i+D+d+++G+QWp+L+  LasR +   sl iT++++  +g+ e++++tg+rL +fA+++g+p++f+ l +++  dl  e+  v+
  PDK_30s929832g001 172 TEGDREVRIVDLDVMEGIQWPPLMVDLASRIGT--SLWITALVE--AGNVEAVHRTGRRLVEFADSIGLPLRFDCLQVNKEGDL--ER--VE 255
                        ******************************987..9********..67***************************977766655..44..44 PP

               GRAS 198 pgE.alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsleaklpres.eeri 283
                         gE +l++n++++  + +++s ++ +    +L   ++l+Pk+vv+ve+++   +++   sF+e f+eal+++sa+fdsl+ ++  +     +
  PDK_30s929832g001 256 AGEgSLVINCMVNQLQRPSRSFKSLN---FLLGGARKLRPKLVVLVEEDLFSfGKGpfkSFVEFFCEALHHFSAIFDSLNCSFVGDYrMGLR 344
                        54438999**9987777755555555...89******************6665766555899*****************6665555527788 PP

               GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                         vEre+lg++iv+ v +  +e       +e W   ++   GF+++pls+ +++qak l+  ++ +gy v++e+g l l Wk+rpL++vS
  PDK_30s929832g001 345 LVEREMLGPRIVDSVGKFLKE-------MEGWGGGFSGlEGFRTIPLSSCNVSQAKFLVGLFG-RGYGVQHEKGRLALSWKSRPLTTVS 425
                        9**************998887.......789**9998648***********************.************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.85644409IPR005202Transcription factor GRAS
PfamPF035144.2E-6586425IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEYEPSYGQC TLQANEDIIF PLIMHDVFPD DGHMDTGFPG MSCGDEPLVH DAFMGLQKSL  60
PSGSTHEYSS QQEILVAIQG ELMEENSLAD LLLASAKALL LGREMDANPL NQLAYYFAQG  120
LRARTNDLGA NDVFPVHSMA SDGMSAYQML QELSPYVKFG HFAANQAILE ATEGDREVRI  180
VDLDVMEGIQ WPPLMVDLAS RIGTSLWITA LVEAGNVEAV HRTGRRLVEF ADSIGLPLRF  240
DCLQVNKEGD LERVEAGEGS LVINCMVNQL QRPSRSFKSL NFLLGGARKL RPKLVVLVEE  300
DLFSFGKGPF KSFVEFFCEA LHHFSAIFDS LNCSFVGDYR MGLRLVEREM LGPRIVDSVG  360
KFLKEMEGWG GGFSGLEGFR TIPLSSCNVS QAKFLVGLFG RGYGVQHEKG RLALSWKSRP  420
LTTVSILVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-429342935380Protein SCARECROW
5b3h_A9e-439342934379Protein SCARECROW
5b3h_D9e-439342934379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781634.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2H3XC840.0A0A2H3XC84_PHODC; nodulation-signaling pathway 2 protein-like
STRINGXP_008781634.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-44GRAS family protein