PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s929831g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Trihelix | ||||||||
Protein Properties | Length: 440aa MW: 51121.6 Da PI: 6.9862 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.4 | 3.3e-22 | 123 | 219 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li++ +++ e + +kk++W+ vsk+m+er + +sp+qC++k+++lnkryk+++e+ +++ +++++++ ++ PDK_30s929831g001 123 KWTDAMVRLLITVISYLTEGTAELDssakkklavlQKKGKWKLVSKVMAERNCCVSPQQCEDKFNDLNKRYKRLTEILGRGtSCKVVENPVL 214 7**************98888886322456678888**********************************************66999999999 PP trihelix 82 fdqle 86 +d ++ PDK_30s929831g001 215 LDYMH 219 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 2.01E-5 | 29 | 81 | No hit | No description |
Pfam | PF13837 | 2.8E-20 | 121 | 245 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEGNMSAGNM MPGPSSYGSF DLQVSMAMHQ QQQQHGCFHH QQQQPTQTQN QGPMVHQPMN 60 SIFPQSVGQM NEREQQPMLQ MMDYSKVDHG KISTSEEDDT EDGADGPNKS ERGKKAAPWQ 120 RVKWTDAMVR LLITVISYLT EGTAELDSSA KKKLAVLQKK GKWKLVSKVM AERNCCVSPQ 180 QCEDKFNDLN KRYKRLTEIL GRGTSCKVVE NPVLLDYMHH ISDKVKDDVR KILSSKHLHY 240 EEMCSYHNKN RLHLPADPEV QRSVQSLLKT SDDHDAKRAA RDDFDENDQD EDSDDREDDL 300 EENDTLFRDI GGSCFPKRMK QGLVCEDVNF RNSLGPQNNP RRPNSQSISF DVNQVFPEGS 360 TTPWVQKQLI RSRSIQLEEQ RLQIQAEMLE IEKQQFKWKR FRKKKDRELD KMRIQNERMK 420 LENERLALEL KRRELVLDLN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017699023.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661620.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661621.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661622.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661623.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661624.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661625.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661626.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661627.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661628.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661629.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661630.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661631.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661632.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
Refseq | XP_026661633.1 | 0.0 | uncharacterized protein LOC103710100 isoform X1 | ||||
TrEMBL | A0A2H3ZRE9 | 0.0 | A0A2H3ZRE9_PHODC; uncharacterized protein LOC103710100 isoform X1 | ||||
STRING | XP_008793938.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2920 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 9e-86 | sequence-specific DNA binding transcription factors |