PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s929391g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 789aa    MW: 86595 Da    PI: 6.4588
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s929391g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-18561557
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+e+Le++++++++ps  +r++L +++    ++ ++q+kvWFqNrR +ek+
  PDK_30s929391g001  5 VRYTAEQVEALEKVYAECPKPSSMRRQQLIRECpilaNIGTKQIKVWFQNRRCREKQ 61
                       689****************************************************97 PP
2START1494.4e-471413492205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv++s +++g++++ +++ s++ sg a+ra+g+v  ++a+ ve+l d++  W +++++ e+      g  g++
  PDK_30s929391g001 141 IAEETLAEFLSKATGTAVDWVQMSGMKPGPDSIGIIAISRSASGVAARACGLVSLEPAKIVEILKDRP-SWCRDCRSLEVFTIFPAGngGTI 231
                        7899******************************************************9999999999.*******9999999998888*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++l+p  df+++Ry+  l++g++v++++S++     p     +++vRae++pSg+li+p+++g+s v++v+h +l+++++++
  PDK_30s929391g001 232 ELVYMQTYAPTTLAPaCDFWTLRYTIGLEDGSLVVCERSLSGSGGGPIattAHQFVRAEMRPSGYLIRPCEGGGSIVHIVDHLNLEAWSVPE 323
                        **********************************************999999**************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++k ++a+l+++++
  PDK_30s929391g001 324 VLRPLYESSRVVAQKVTFAALHHLRQ 349
                        **********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-14166IPR001356Homeobox domain
PROSITE profilePS5007115.516162IPR001356Homeobox domain
SuperFamilySSF466891.03E-15566IPR009057Homeodomain-like
PfamPF000461.6E-15561IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-17561IPR009057Homeodomain-like
CDDcd000867.77E-16663No hitNo description
CDDcd146865.79E-65593No hitNo description
PROSITE profilePS5084822.619131359IPR002913START domain
CDDcd088757.63E-70135351No hitNo description
Gene3DG3DSA:3.30.530.202.0E-16139323IPR023393START-like domain
SuperFamilySSF559615.63E-32140352No hitNo description
SMARTSM002342.5E-37140350IPR002913START domain
PfamPF018524.9E-44141349IPR002913START domain
PfamPF086702.8E-50646788IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MARYVRYTAE QVEALEKVYA ECPKPSSMRR QQLIRECPIL ANIGTKQIKV WFQNRRCREK  60
QRKEASRLQV VNRKLTAMNK LLMEENERLQ KQVTQLVHEN AYMRQQLQNA SLANDTSCES  120
VVTTPQNALR DPSNPAGLLS IAEETLAEFL SKATGTAVDW VQMSGMKPGP DSIGIIAISR  180
SASGVAARAC GLVSLEPAKI VEILKDRPSW CRDCRSLEVF TIFPAGNGGT IELVYMQTYA  240
PTTLAPACDF WTLRYTIGLE DGSLVVCERS LSGSGGGPIA TTAHQFVRAE MRPSGYLIRP  300
CEGGGSIVHI VDHLNLEAWS VPEVLRPLYE SSRVVAQKVT FAALHHLRQI AQEMSGEVVY  360
ALGRQPAVLR TFSQRLSRGF NDAVNGFVDD GWSVMGSDVM EDVIVATNTS KKINTQANSA  420
DGFSVSGGVI CAKASMLLQN VPPALLVRFL REHRSEWADY RIDAYSATSL KAGSGSFPGL  480
GPCRFSGRQI IMPLAHTVEN EELCSGINEN AVGACFELVF APIDEHFLDD AALLPSGFRV  540
IPLDANKDGF ASCRTLDLAS SLEVGSATNR SAGDKSTDGH NVRSVLTIAF QFPYELHLQD  600
NVVAMARQYV RSIISAVQRV SMALAPSQPG LHVGQKLLPG SPEADTLAHW ICQSYNSHLG  660
MELLRFDGET GESMLKVLWH HQDAVLCCSF KMQPVFTFAN QAGLDMLETT LVALQDISLD  720
KIFDEPGQKA LCSEFAKLLE QGYAYLPAGV CLSGMGRHVS YEQAIAWKVL GEDNSVRCLA  780
FCFMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785281.10.0homeobox-leucine zipper protein HOX9-like
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2H3XKR70.0A0A2H3XKR7_PHODC; homeobox-leucine zipper protein HOX9-like
STRINGXP_008785281.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein