PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s922631g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 297aa    MW: 32638.9 Da    PI: 6.5098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s922631g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.3e-12193218126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd CkF H+
  PDK_30s922631g001 193 YQPDICKDYKETGYCGYGDACKFLHD 218
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709192220IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-12193223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.9E-9264296IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.53E-9269295No hitNo description
CDDcd001622.23E-5270296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MADSGEVCNF FRKPTKNKNI RKRKAAGSSD DDDEEGSQPS SSIAQRSKKP VIADNKLHFS  60
TARSSSKPSG DGTGDDDDDG HKAAGGRASA LFHFESSKEI QVQHDSGATA TLETETEFSK  120
DARAIRERVL KQAEEALKGK SKGHDKLYRG LHGYTDYKAG LRREQTVAGV KAGGAHGPLR  180
ASSNIRLSAR FDYQPDICKD YKETGYCGYG DACKFLHDRG DYKSGWQLEK EWEVVEKARK  240
RGLALGGGEP DGDGGDDEDD DDDDSLPFAC FICRQPFVDP VVTRCKHYFC EHCALKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-55629613288RING finger protein 113A
5z58_M2e-55629613288RING finger protein 113A
6ff4_t2e-55629613288RING finger protein 113A
6ff7_t2e-55629613288RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789967.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-126C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2H3XX230.0A0A2H3XX23_PHODC; zinc finger CCCH domain-containing protein 1
STRINGXP_008789889.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-121C3H family protein