PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s921311g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 29586.3 Da PI: 8.42 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.6 | 1e-39 | 5 | 154 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.......................kvka.eekewyfFskrdkky 68 ppG+rF Pt+eel+ +yL++k+e+k+l++ e i+ v++y+++P++Lp+ + + + ++w+fF++r++++ PDK_30s921311g005 5 PPGLRFYPTEEELLGFYLRNKLENKRLKEMERyIPVVGVYSYDPEQLPReilhlldlqmclfsillttmsgeA-SIrDPEQWFFFCPRQERE 95 8*************************7776656***************6699********9999998765531.2224569*********** PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 a+g +++r+t sgyWk tg+ +vls+++ +g kkt+vfy+grap+g+kt+W m+ey+ PDK_30s921311g005 96 ARGGKPTRTTPSGYWKVTGSPGHVLSSQNLRIGWKKTMVFYTGRAPTGTKTKWKMNEYK 154 **************************99999***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-40 | 3 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.508 | 4 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-23 | 5 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MTDQPPGLRF YPTEEELLGF YLRNKLENKR LKEMERYIPV VGVYSYDPEQ LPREILHLLD 60 LQMCLFSILL TTMSGEASIR DPEQWFFFCP RQEREARGGK PTRTTPSGYW KVTGSPGHVL 120 SSQNLRIGWK KTMVFYTGRA PTGTKTKWKM NEYKALEEAA ASTSTTPPRL RNEFSVCRVY 180 IKSGTLRSFD RRPSASIAMN YSESQRRNPE ASSSANPQIA DQRTSSHGSS SPGDDGSQPL 240 AAGATFDWDM LEDIIYPEQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-29 | 5 | 185 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-29 | 5 | 185 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-29 | 5 | 185 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-29 | 5 | 185 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
3swm_B | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
3swm_C | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
3swm_D | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
3swp_A | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
3swp_B | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
3swp_C | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
3swp_D | 6e-29 | 5 | 185 | 21 | 171 | NAC domain-containing protein 19 |
4dul_A | 5e-29 | 5 | 185 | 18 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-29 | 5 | 185 | 18 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912317.1 | 1e-139 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 7e-68 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3Q0HW39 | 1e-137 | A0A3Q0HW39_PHODC; NAC domain-containing protein 90-like | ||||
STRING | XP_008784235.1 | 1e-174 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-66 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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