PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s919591g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YA
Protein Properties Length: 343aa    MW: 37355.1 Da    PI: 9.6672
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s919591g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.5e-32189245158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq Rakle+++kl  k rkpylheSRh hA++R+RgsgGrF
  PDK_30s919591g001 189 EEPIYVNAKQYRAILRRRQLRAKLEAQNKL-VKVRKPYLHESRHLHAMKRARGSGGRF 245
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-36187248IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.858188248IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-27190245IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-23191213IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860193213IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-23222245IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPLNNVKAYD RQPFSNKYSE SSLVRSASNC VDNCASWLNS SGSSFPQSSY FTNIYMNMDF  60
LAQHGNQIKQ LGGQIPDQDS SSTQSTGQSH QEVSGTSEGN LHEQRVSAQA DLVNYGGVKS  120
LVMVAIFYFS DMSFDTLCLA LVIVSELLKG TGFVLVLVRA LFNGFKIHPQ MMGMAPSSRV  180
PLPLEPAAEE PIYVNAKQYR AILRRRQLRA KLEAQNKLVK VRKPYLHESR HLHAMKRARG  240
SGGRFLNINQ LQQQQQQLQP SVTTGLENVS GSNLHSENGP VGSSATPTSS DVTSVSTSGG  300
MLLGQQDHLG FLSADFRSHV RGSSQGGGGM IGNGSQPRIT IMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21189257270NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936981.11e-171nuclear transcription factor Y subunit A-3 isoform X2
SwissprotQ9LVJ72e-43NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A2H3XRW41e-132A0A2H3XRW4_PHODC; nuclear transcription factor Y subunit A-6-like
STRINGXP_008798898.11e-166(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.16e-33nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]