PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s907751g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Nin-like | ||||||||
Protein Properties | Length: 247aa MW: 28048 Da PI: 6.254 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 50.9 | 3.1e-16 | 183 | 228 | 2 | 47 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 +k+++ e+l++y + p AA++L++++T+ K+ CR++G++RWP+ PDK_30s907751g001 183 TKNMTREELEQYTDFPRDRAARKLNLSVTTFKKLCRKHGMRRWPYK 228 89******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.129 | 173 | 247 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-15 | 185 | 229 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDNSEHYDPD HGDTHRHLNS PEPPLDPLIT SWSSFLWEYE SFSPSPPPVP NNDFGLASYQ 60 TAAPVQENVP SRNLHSSEPP LDPQITSWPS FLRKDESFPP PPPPVPNNDF GLTSYQAAAP 120 VQENEPSRTV DNTKSLIGES DLLPETDFGG SSQLGSGYVT GTEGRGGLTG SKKTGLAAQR 180 ERTKNMTREE LEQYTDFPRD RAARKLNLSV TTFKKLCRKH GMRRWPYKRP DWQRIQSFTW 240 RLYRLDY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026657665.1 | 2e-74 | uncharacterized protein LOC113461822, partial | ||||
TrEMBL | A0A3Q0HWD8 | 5e-73 | A0A3Q0HWD8_PHODC; uncharacterized protein LOC113461822 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 6e-09 | RWP-RK domain-containing protein |