PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s906581g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31868.7 Da    PI: 4.5712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s906581g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.7e-12958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       k+i++k  rq +f kR + + KKA+EL  L  ++ ++i + ++g l+ ++
  PDK_30s906581g001  9 KFISDKKSRQSSFLKRSKELQKKAHELQELGSIDTLLICYDERGLLKSWP 58
                       79***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.998161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-6159IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-16289IPR002100Transcription factor, MADS-box
CDDcd002668.52E-15273No hitNo description
PRINTSPR004046.5E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-101057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRRKVSLKF ISDKKSRQSS FLKRSKELQK KAHELQELGS IDTLLICYDE RGLLKSWPEA  60
PPDIHRIISR YYSIGEAQRQ RYTRSLLDFS GNKGNKSKQE QSSPTWDGQL DGLLEKIQEE  120
IAALDDKIHL VRKKMESIKR STNQSELVIP HPQSGQSNIS CAPTFDFNDP VSIDYYSSSI  180
YQHDDMGIPY PCSPMSMQIT DFPDFSTFTD DFLGDINLSN PPVFDDSDWW KMEYPCSPMS  240
MQITEFPDVS TFTEDFLGDI NLSNPPVFDD SDWWEMG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008775223.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-11AGAMOUS-like 103