PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s896621g013

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 550aa MW: 59045.3 Da PI: 8.9613

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s896621g013	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PDK_30s896621g013 66 FICEVCNKGFQREQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	12.6	0.00041	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PDK_30s896621g013 142 WKCDKCSKRYAVQSDWKAHSKTC 164 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.1E-6	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.34E-7	65	88	No hit	No description
PROSITE profile	PS50157	10.99	66	88	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.7E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.7E-4	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.34E-7	137	162	No hit	No description
SMART	SM00355	140	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MAAASSSAPF FGIREEEHHN QQQQSSSTPG SSAPAASQPP APQKKKRNLP GNPTLSPKTL 60 LATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKNPK EQRRRVYLCP EPTCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAQESARI PTGLSTIGSH LYGHSSMGLG LSQVNPQLSS LQNQTHPSAD 240 LLRLGGSGGG TQFDHLNHPS FRQPQPPHSS PFFLGGGSSQ GFNDDPQSNH PLLQGKPFHG 300 LMQLPDLQAN TNNASSSSTA AATAANIFNL SFFSNGGSTS NMNNSNNTGN QSTNLLIPDH 360 FNNGNASTEP TALFSGNLMN DHMGPGISSL YNSSIYNESS VPQMSATALL QKAAQMGATS 420 SGGSGNFLLR GFGCSFSSGS KPTGFQATFS GGGDGESSRS QVEHENHFQD LMNSLANGST 480 GIFSGGHEQQ TGFGGFNPGL CNMDDGKLHR NPSTGGIGGS DGLTRDFLGV NSMVRSMGGA 540 ISPREQHLDI

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MAAASSSAPF FGIREEEHHN QQQQSSSTPG SSAPAASQPP APQKKKRNLP GNPTLSPKTL  60
LATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKNPK EQRRRVYLCP EPTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQESARI PTGLSTIGSH LYGHSSMGLG LSQVNPQLSS LQNQTHPSAD  240
LLRLGGSGGG TQFDHLNHPS FRQPQPPHSS PFFLGGGSSQ GFNDDPQSNH PLLQGKPFHG  300
LMQLPDLQAN TNNASSSSTA AATAANIFNL SFFSNGGSTS NMNNSNNTGN QSTNLLIPDH  360
FNNGNASTEP TALFSGNLMN DHMGPGISSL YNSSIYNESS VPQMSATALL QKAAQMGATS  420
SGGSGNFLLR GFGCSFSSGS KPTGFQATFS GGGDGESSRS QVEHENHFQD LMNSLANGST  480
GIFSGGHEQQ TGFGGFNPGL CNMDDGKLHR NPSTGGIGGS DGLTRDFLGV NSMVRSMGGA  540
ISPREQHLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	138	202	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-34	138	202	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120603	1e-126	AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008804351.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_008804358.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_026664720.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-126	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2H3YVB1	0.0	A0A2H3YVB1_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRING	XP_008804317.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-104	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]