PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s885281g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 436aa    MW: 47275.3 Da    PI: 8.4102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s885281g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-10120827
                       GGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                       ++++tGtCk+G++CkF+H++
  PDK_30s885281g001  1 YYLKTGTCKFGATCKFHHPK 20
                       8*****************96 PP
2zf-CCCH36.11.1e-114266327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C +++rtG+Ck+G++CkF+H++
  PDK_30s885281g001 42 EKECAYYLRTGQCKFGNTCKFHHPQ 66
                       679********************97 PP
3zf-CCCH39.31.1e-12250275227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  PDK_30s885281g001 250 DQPECQFYMKTGDCKFGAVCKFHHPR 275
                        689*********************96 PP
4zf-CCCH38.32.2e-12295321127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++lC f+ar+G+Ck+G++CkF H++
  PDK_30s885281g001 295 PGEPLCVFYARYGICKFGPNCKFDHPM 321
                        589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-4119IPR000571Zinc finger, CCCH-type
SMARTSM003563.9120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915121IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4223967IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-53966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-73967IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-94266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-44565IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53248276IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9250275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6251278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5254276IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-8294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075294322IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4299319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
YYLKTGTCKF GATCKFHHPK DKAGIAGRVQ LNILGYPLRP NEKECAYYLR TGQCKFGNTC  60
KFHHPQPSNA MVDLRGSPVY PPVHSPTTPG QQSYPGGLTN WSLSRTSFIP SPRWQDPSSY  120
AQLILPQGLV QVPGWNPYPL NINVDINLAL LNIDVDINLD LVRRTDVPVG TGIGTVPNRT  180
GTVPVWLGQM GSSSPDSQQQ TPGAGQYYGT SRQSETGAGA QGTFSSYRPG SIPMGVYALQ  240
RENIFPERPD QPECQFYMKT GDCKFGAVCK FHHPRERLVP VPNCSLSPLG LPLRPGEPLC  300
VFYARYGICK FGPNCKFDHP MGTFTYGIST SSTADAPRRL IGSSSGPPAL TSSSEGPADA  360
GISSRDSRRL SLSESRQIGS GDETMEAEAS HTSSSMGQIV LCCKISHGQF NMLNLYGKDS  420
GKTEGSDLYL SNGTKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812314.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-162ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2H3ZEL00.0A0A2H3ZEL0_PHODC; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-103zinc finger protein 1