PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s884401g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 263aa    MW: 30127.2 Da    PI: 7.5974
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s884401g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1980133356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ +q+++Le+ Fe +++++ +++++LA+ lgL+ rqV +WFqNrRa++k
  PDK_30s884401g002  80 KKRRLSVDQVKTLEKTFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWK 133
                        456899***********************************************9 PP
2HD-ZIP_I/II127.17.7e-4179171193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrls +qvk+LE++Fe e+kL+p+rK++la++Lglqprqva+WFqnrRAR+k+kq+E dy+aL+++y++lk + ++L +++e+L++e+k
  PDK_30s884401g002  79 EKKRRLSVDQVKTLEKTFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWKSKQMEGDYAALRARYETLKIDCDALLHDKEKLAAEIK 170
                        69***************************************************************************************998 PP

        HD-ZIP_I/II  93 e 93 
                        +
  PDK_30s884401g002 171 Q 171
                        7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1971136IPR009057Homeodomain-like
PROSITE profilePS5007117.02275135IPR001356Homeobox domain
SMARTSM003893.6E-2078139IPR001356Homeobox domain
PfamPF000466.7E-1780133IPR001356Homeobox domain
CDDcd000861.21E-1680136No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2082141IPR009057Homeodomain-like
PRINTSPR000317.0E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000317.0E-6115131IPR000047Helix-turn-helix motif
PfamPF021835.4E-15135176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MALVQWTSPM ATRHITPVFK KFKIKTEIKI HPVIILDLDR SSGPVQEKEK YEERFQSMMD  60
GVEWEDEELC SNGRSALGEK KRRLSVDQVK TLEKTFEVEN KLDPDRKARL AQDLGLQPRQ  120
VAIWFQNRRA RWKSKQMEGD YAALRARYET LKIDCDALLH DKEKLAAEIK QLKAKLANSA  180
TITRLENKDA EERPALIFRD GASDSDSSVY STNALFSPNG TSQELVPWKR ISQEHEKIYD  240
SVHSVAGLSC LNKHDETPSI IEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110DRKARLA
2127135RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782176.11e-115homeobox-leucine zipper protein HOX13-like
SwissprotA2YWC02e-47HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2482e-47HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A2H3XDH81e-113A0A2H3XDH8_PHODC; homeobox-leucine zipper protein HOX13-like
STRINGXP_008782176.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-43homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]