PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s881991g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 582aa    MW: 63237.6 Da    PI: 6.7645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s881991g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.32.6e-07181195216
                        --SS-EEEEEEE--T CS
               WRKY   2 dDgynWrKYGqKevk 16 
                        +DgynWrKYGqK+vk
  PDK_30s881991g001 181 EDGYNWRKYGQKQVK 195
                        8*************9 PP
2WRKY22.42.5e-071942183459
                        -EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  34 vkkkversaedpkvveitYegeHnhe 59 
                        vkkkvers+ +++++ei+Y+g Hnh+
  PDK_30s881991g001 194 VKKKVERSH-EGHITEIIYKGAHNHT 218
                        8********.***************8 PP
3WRKY103.61.1e-32376434159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  PDK_30s881991g001 376 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHD 434
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-5178194IPR003657WRKY domain
SuperFamilySSF1182904.58E-10179220IPR003657WRKY domain
SMARTSM007741.9E-8180219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-4195220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-37361436IPR003657WRKY domain
SuperFamilySSF1182901.06E-28368436IPR003657WRKY domain
PROSITE profilePS5081138.124371436IPR003657WRKY domain
SMARTSM007747.5E-38376435IPR003657WRKY domain
PfamPF031066.0E-25377434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MEQPYRCTKT PSFYKAQPSP TTGKFPFVQN GNSNPITSSV SAFPSKNEDV HGAFSFKPHL  60
DSSSSSFSSA EKKGREKRGA STVDQQQSLP SIQVSVQSGK PVQTSSPETG TLNLQNQQQF  120
NLHAGFSDSS DRKDATDDVM FNQRMSDSFM GNDQSPPPDD QQDGEADPKE ICSVALGAPA  180
EDGYNWRKYG QKQVKKKVER SHEGHITEII YKGAHNHTKP PPNRRTGFPS SHPFNDPQID  240
GSEQPGLQAS FEGKPLRAST QNGTGGQEWR GDGQKALSSA TVAAEFCDPS TSVQTQDGPR  300
FESQDAIDVS STLSNDEEED DQATHGSVSL GCDGEGDETE SKRRKHDACP IEMCAASRAV  360
REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCTVR KHVERASHDL  420
KSVITTYEGK HNHDVPAARN SSHPNSAPSA TAANSASQSH NLHRRLEPTQ DGLVRFDAPT  480
PLGTFGLPGR EQLGPAAAAF SFGMGQQSLA NFMMAGLGPM ASMKMSVLPP AHPYLGHRQV  540
TESGFMIPKG EPKEEPMSES RLPMSNGGSV YHQMMSKLPL GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38367437878Probable WRKY transcription factor 4
2lex_A7e-38367437878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0508521e-145KM050852.1 Acrocomia aculeata isolate PL75 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508531e-145KM050853.1 Acrocomia aculeata isolate PL76 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508541e-145KM050854.1 Acrocomia aculeata isolate PL77 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508601e-145KM050860.1 Astrocaryum alatum isolate PL102 WRKY transcription factor 12 (WRKY12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806182.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_017701159.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_026665021.10.0probable WRKY transcription factor 2 isoform X1
TrEMBLA0A2H3YZH50.0A0A2H3YZH5_PHODC; probable WRKY transcription factor 2 isoform X1
STRINGXP_008806182.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-111WRKY DNA-binding protein 2