PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s880811g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 446aa    MW: 47770.6 Da    PI: 7.7702
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s880811g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.36.7e-39732172133
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...eaesssss 81 
                         g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+ +         +  ++++    e++++ + 
  PDK_30s880811g004  73 SGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAINELPALdgtfpeapkPHHPEEKLppeEPDAEAEP 164
                        689*************************************************************9988877662222233344433333333 PP

                TCP  82 asnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                        + n++++ + +++ +s+ s++s+ s+l+l++ e r kar+rar r ++k + +
  PDK_30s880811g004 165 SYNQQQHLSLSKSGCSSTSETSKGSVLSLSRsEIRVKARERARVRVKDKEKDR 217
                        3344555677788899999999999******99***********999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3874215IPR005333Transcription factor, TCP
PROSITE profilePS5136932.97175133IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.657196215IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEMEENHACK RSRVGNGTAT SSSQAAKIGR KTQHQDDDDE DGEGRGGGGG GAESRVMSWH  60
HPSSRIFRVS RASGGKDRHS KVYTAKGLRD RRVRLSVSTA IQFYDLQDRL GYDQPSKAIE  120
WLIKAAAAAI NELPALDGTF PEAPKPHHPE EKLPPEEPDA EAEPSYNQQQ HLSLSKSGCS  180
STSETSKGSV LSLSRSEIRV KARERARVRV KDKEKDRDDG HVAVSHHQNA NPCLNSQTSF  240
TELLTGGGSS NGADVATAQA NSVNCLQKQM RHLPTVTTTA DYFGQAGLFP QAQKSHQLPS  300
GFSSQPNFGN SSPMGMAPLN IAATAAGAGD HPEMQQFYFL QDHLMSASAM GAGPGDYNLN  360
FPISSGLAGF NRGTLQSNSP SQLPHHLHRL SSPVDGSNLP FFFGSAAPAA AATSAENQFS  420
AGFDGRLQLC YGDGYRHSDL KGKGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2680134155Putative transcription factor PCF6
5zkt_B3e-2680134155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0669303e-53BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784856.10.0transcription factor PCF6-like
TrEMBLA0A2H3XJS10.0A0A2H3XJS1_PHODC; transcription factor PCF6-like
STRINGXP_008784856.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2