PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s877941g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 591aa MW: 63228.9 Da PI: 8.7311 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PDK_30s877941g001 68 FICEVCNKGFQREQNLQLHRRGH 90 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.2e-05 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+Lk H +t+ PDK_30s877941g001 144 WKCDKCSKRYAVQSDLKAHSKTC 166 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.6E-6 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.49E-7 | 67 | 90 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.9E-5 | 68 | 90 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 132 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.49E-7 | 139 | 164 | No hit | No description |
PROSITE profile | PS50157 | 8.642 | 144 | 172 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 62 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MASTSSTVPF YGSIREEDEH NQMKQQQSAS TPTSSTAAPQ TTAPVKKKRN LPGNPTLSPK 60 TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLRQKT TKEVQRRVYV CPESTCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDLK AHSKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAQESA RIPTGLSTIG SHLFGNSSMA LGLSQENSQI TSLQDQSHQS 240 SNILRLGGGS GSGSHFDPLI SSSNPSPFRP PQPPPSSAFF LGGGSNQDFD EETRSHHSLL 300 QNKPFHGLMQ LPDLQSRTTA SSSAAAANLF NLNFFSNSSS TSSINTSNIT SNQNNHLMIS 360 DQFSSGNGST ESTTLFSGNF MSDHMAAGMP SLFNTSMRNE SSLPQMSATA LLQKAAQMGS 420 TTSGGSSLLQ GFSSASPSGA KNTSFQAIFG GGSNGSGDVL RFQMENETRL QHLMNSLANG 480 NAGLFGGSGG VAAFGGNCTT GGHEQEAGGF GGFNSGLCNM DEARFQHNIS SAGSLGGSDR 540 LTRDFLGVGN MVRSMGGGVS QREQHHGIDM SSMDPEMKSG SSSQSFDGGT L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-31 | 140 | 204 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 1e-31 | 140 | 204 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374308 | 1e-129 | AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008811075.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_008811077.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_017701960.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_017701961.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_026666290.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q9ZUL3 | 1e-127 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2H3ZAW8 | 0.0 | A0A2H3ZAW8_PHODC; protein indeterminate-domain 5, chloroplastic-like | ||||
STRING | XP_008811073.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-105 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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