PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s873781g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 1196aa    MW: 135018 Da    PI: 7.1646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s873781g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-08424444425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        ++C++fa+ G+C++G+ CkF+H
  PDK_30s873781g005 424 VPCKYFAK-GHCRHGEDCKFSH 444
                        59******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.277262289IPR000571Zinc finger, CCCH-type
SMARTSM0035614262288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4351383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258358385IPR000571Zinc finger, CCCH-type
SMARTSM003560.039358384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868420447IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4422446IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6423445IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-6424444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4425445IPR000571Zinc finger, CCCH-type
SuperFamilySSF493632.88E-25797885IPR008963Purple acid phosphatase-like, N-terminal
Gene3DG3DSA:2.60.40.3803.5E-25798886IPR015914Purple acid phosphatase, N-terminal
PfamPF166563.5E-17798876IPR015914Purple acid phosphatase, N-terminal
CDDcd008395.75E-1038861158No hitNo description
Gene3DG3DSA:3.60.21.101.8E-948891156IPR029052Metallo-dependent phosphatase-like
SuperFamilySSF563005.52E-568891154IPR029052Metallo-dependent phosphatase-like
PfamPF001491.8E-208911081IPR004843Calcineurin-like phosphoesterase domain, apaH type
PfamPF140082.3E-1810971154IPR025733Iron/zinc purple acid phosphatase-like C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003993Molecular Functionacid phosphatase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1196 aa     Download sequence    Send to blast
MADAHFPNKV RKDNALPAKA VLSHDRESKS SWSSFKYNHS QFSKWSEMEG GNTQIHGDDF  60
EACQFAPWSK RPRSPKWSDM EADHKEGSKN SSWEPVSGNQ STRGDDNVSR DTAGWGTTVD  120
QTDPDAWKQH KEGLKNSSWE PVSGIQSTRG DDNVSRDTAS CGTTLDQAGP EAWKQCKESF  180
KNSSWEPVSG SQSARADDNV IRDAAGWGTA LDQTGPDAWK QHNHSVSPDN GWNRSYRSRS  240
RSPFKGLRHA SESRNNRGRK GGRSAAPCRD FVAARHRRSG QCRYLHEDGS PRHTGRYHNN  300
DATEIRKSRS ERGRYSVRDN KEDIRDSLDQ SNYSRNRFSR RHESDGSGEE RHEVYKTSRS  360
AGLCHDFARG RCHRGSMCRY LHHDASSGGG PFRKDNPRER TFDRRDADAS SFRQNLEPRR  420
VTDVPCKYFA KGHCRHGEDC KFSHQVLPQS HSKERRDDDT WNTGTESDKS PVWNGPKWGE  480
CDETATSWDG PKWGDQAATS WNGSKWGDVA EMHAPNSSQW MSDSNGAGDA APHSMGIKDY  540
TIKSQHPPSS EPEKNNHQSL LKECFGESWQ SHPLAPQPPD AQNISQNEQN QQVLPQLPSN  600
TNLTGQNLQC LLPHNGQSQN LAEKSQHYLS LSPHISPSQQ GNLNNSADLE EKLHCGKHEL  660
KHVEPDGDDS KKVSDTEIGQ SKKEEEIAQS KGVNAYAHTH GEGKRSRDDK GLRMFKFALV  720
EYVKDILKPT WKEGRLTKEA HKTIVKKVIE KVTSTLQDPN IPWTQERIDM YLSYSKVKLN  780
NLVQDSAVLR FWPQNLYKVH ISLAGEKHMR ISWITDDESS PSIVKYGTSP GEYAYSSQGE  840
STSYNYLFYS SGKIHHVVIG PLEDGTVYYY QCGGQDPEFY LKTPPSQFPI TFAVVGDLGQ  900
TGWTTTTLDH IAQCKYDVQL VPGDLSYADY QQHLWDSFGE LLQPLASARP WMVTEGNHEK  960
EKILLFEAGF QAYNARWKMP YAESGSASNL YYSFEVAGVH VIMLGSYTEY DKNSDQYAWL  1020
KADLAKVDRE KTPWLLVLLH APWYNSNWAH QGEGDGMMAA IEPLLYAAGV DILLAGHVHA  1080
YERSERVYNG GLDPCGAVHI TIGDGGNREG LAQRYLHPKP EWSAFREASF GHGELKIINS  1140
THAFWSWHRN DDDEMKIWGD RRYSEFSFLR RITKIAAFAV GVTIKNPAHK SSLTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dhl_A2e-78793115221403Purple acid phosphatase
4dhl_B2e-78793115221403Purple acid phosphatase
4dhl_C2e-78793115221403Purple acid phosphatase
4dhl_D2e-78793115221403Purple acid phosphatase
4dsy_A2e-78793115221403Purple acid phosphatase
4dsy_B2e-78793115221403Purple acid phosphatase
4dsy_C2e-78793115221403Purple acid phosphatase
4dsy_D2e-78793115221403Purple acid phosphatase
4dt2_A2e-78793115221403Purple acid phosphatase
4dt2_B2e-78793115221403Purple acid phosphatase
4dt2_C2e-78793115221403Purple acid phosphatase
4dt2_D2e-78793115221403Purple acid phosphatase
6g46_A2e-78793115221403Fe(3+)-Zn(2+) purple acid phosphatase
6g46_B2e-78793115221403Fe(3+)-Zn(2+) purple acid phosphatase
6g46_C2e-78793115221403Fe(3+)-Zn(2+) purple acid phosphatase
6g46_D2e-78793115221403Fe(3+)-Zn(2+) purple acid phosphatase
6hwr_A2e-78793115221403Fe(3+)-Zn(2+) purple acid phosphatase
6hwr_B2e-78793115221403Fe(3+)-Zn(2+) purple acid phosphatase
6hwr_C2e-78793115221403Fe(3+)-Zn(2+) purple acid phosphatase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803631.10.0zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A2H3YTF90.0A0A2H3YTF9_PHODC; zinc finger CCCH domain-containing protein 55-like
STRINGXP_008803631.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-11C3H family protein