PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s873491g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 687aa    MW: 73724.9 Da    PI: 5.9589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s873491g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08278298526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  PDK_30s873491g002 278 PCPDFRK-GACRRGDLCEYAHG 298
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127969.8E-956123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.96356131IPR020683Ankyrin repeat-containing domain
SMARTSM002480.435686IPR002110Ankyrin repeat
SuperFamilySSF484031.87E-1457134IPR020683Ankyrin repeat-containing domain
CDDcd002042.27E-1258134No hitNo description
Gene3DG3DSA:1.25.40.204.8E-1658136IPR020683Ankyrin repeat-containing domain
SMARTSM002480.04491123IPR002110Ankyrin repeat
PROSITE profilePS5008811.48791126IPR002110Ankyrin repeat
SMARTSM003561.2E-5273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4277300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169278300IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5278298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4306336IPR000571Zinc finger, CCCH-type
SMARTSM0035678308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNHLTLETDD NFSSLLELVA DNDADGLRRA DEEPSAVDEI GLWYGRKKGS NRMVLEPRTP  60
LMVAATYGSI EVLQLILSSS SVDVNRCCGP DKTTALHCAA SGGSANAVDA VKLLLSAGAD  120
ASLVDANGHR PADVIAVPPK LVEVKLALEE LLGSPSGGNR RFFRLSTSTS SFSSPPLSLS  180
PDEDGSPSSD SSASPTAGKF HDHLPASVAS EKKEYPVDPS MPDIKNSIYA TDEFRMFSFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGACRRG DLCEYAHGVF  300
ECWLHPAQYR TRLCKDGTSC TRRVCFFAHT NEELRPLYVS TGSAVPSPRS SASAAMEMAA  360
AMSLLPGSPS SVSPNVPALH LPGSNLQSSR LRTSLSARDM PADEFSVLPE LEAAQQQLSD  420
FCFSPSQSRL GSSLAGNRPV RSTTLAPSNL DDLFSAEISS SPRYNSDQGG VFSPSHKSAV  480
LNPFQQQQQQ SLLSPVNTNS LFSPKAVDPQ QQLSGHSTLL QASLGVSSPG RMSPRNMEPL  540
SPMSSRLAAL AHREKLQQQL RSLSSRDLSS NNGVPSMVGL PGNSSWSNWG SPSGKVDWGV  600
DGAELGRYKR SASFELGSGG EEPDVSWVQS LVSPPEAKEE HETNTLASNG SGGASDGSNN  660
SNNQLDGSDH TVLGAWLEQK QLDQLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778227.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3X4K20.0A0A2H3X4K2_PHODC; zinc finger CCCH domain-containing protein 24-like
STRINGXP_008778227.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-143CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]