PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s873351g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 200aa MW: 22500.1 Da PI: 4.8352 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.2e-19 | 11 | 64 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k PDK_30s873351g005 11 KKRRLSVDQVRALEKNFELENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWK 64 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.5 | 1.5e-42 | 10 | 101 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls +qv++LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+aLk++ydal+++ ++L++++e+L e+k PDK_30s873351g005 10 EKKRRLSVDQVRALEKNFELENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLERDYAALKASYDALRADFDALHRDKEALLVEIK 101 69*************************************************************************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.297 | 6 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-19 | 7 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.8E-18 | 9 | 70 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-16 | 11 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.75E-16 | 11 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 13 | 73 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.8E-6 | 37 | 46 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-6 | 46 | 62 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-17 | 66 | 107 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MQGGGGGGGE KKRRLSVDQV RALEKNFELE NKLEPERKVR LAQELGLQPR QVAVWFQNRR 60 ARWKTKQLER DYAALKASYD ALRADFDALH RDKEALLVEI KVLKEKLGED ESLSLSSVKE 120 EPVVSESENK ASEEPPAPVC KDGSSDSDSS AVLNDGGFFF QHQLLKMEDG GFLGGEEPCS 180 SFFSDDHAAT LNWYYPEHWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 66 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008805896.1 | 1e-123 | homeobox-leucine zipper protein HOX20-like | ||||
Swissprot | A2YWC0 | 3e-68 | HOX20_ORYSI; Homeobox-leucine zipper protein HOX20 | ||||
Swissprot | Q6Z248 | 3e-68 | HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20 | ||||
TrEMBL | A0A2H3YYX4 | 1e-122 | A0A2H3YYX4_PHODC; homeobox-leucine zipper protein HOX20-like | ||||
STRING | XP_008805896.1 | 1e-122 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 8e-40 | homeobox protein 16 |
Publications ? help Back to Top | |||
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