PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s870811g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 484aa    MW: 54676.1 Da    PI: 5.2568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s870811g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.9e-5191361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGf FhPtd el+++yLk+k+ g+k+e+ e+i+evdiyk+ePwdLp+  ++ +++++w+fF++rd+ky++g+r+nrat++gyWk+tgkd+
  PDK_30s870811g005   9 LPPGFGFHPTDAELISHYLKRKILGQKIEF-EIIPEVDIYKHEPWDLPAqcHIPTRDSKWHFFTSRDRKYPNGSRSNRATEAGYWKSTGKDR 99 
                        79***************************9.99***************5346667999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  +++++g+kktLvf++gr p g+++dW+mhey +
  PDK_30s870811g005 100 NIKL-HNRVIGTKKTLVFHEGRPPCGKRSDWIMHEYYI 136
                        ****.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-584159IPR003441NAC domain
PROSITE profilePS5100555.7869159IPR003441NAC domain
PfamPF023652.5E-2510135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEILSAFSLP PGFGFHPTDA ELISHYLKRK ILGQKIEFEI IPEVDIYKHE PWDLPAQCHI  60
PTRDSKWHFF TSRDRKYPNG SRSNRATEAG YWKSTGKDRN IKLHNRVIGT KKTLVFHEGR  120
PPCGKRSDWI MHEYYIDENE CKAAPGMKDI FVLCRVTKRN GWASEGEMTQ TKEVSDFQEQ  180
PKDMVGSVPR EESSTLYNNV EDIEAWLSEL YDPDFSGIPS IDEVNNEAEA DHASLVSKQE  240
PVESCLQPAG ADDKDYLLPD DISSILRSGS DNFDLDMFGE SNFGSIGVAS VLQYNAGMAG  300
YDLSPAASNF VCEGVKREDE NIDTGIQIRQ RHAKPSTVIS NHSIKLQVHK MESRNPGLVN  360
RTIQLVNEDR HLDMNDGDNK HLSDAESSTI SNSEGNQSDL SCHTASKTLQ KRSADPVRPQ  420
KIPGSLGDKG FPHIYEVDRN TRCSFLTCDC FCEQELWFHP MFLYGVLYSP VYSRMGFLLG  480
GYQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47516211172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784959.10.0NAC domain-containing protein 74-like
SwissprotQ7GCL71e-101NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A2H3XK060.0A0A2H3XK06_PHODC; NAC domain-containing protein 74-like
STRINGXP_008784959.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.15e-70NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]