PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s861301g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 300aa    MW: 33197.4 Da    PI: 9.0868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s861301g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-097898526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        C++f++ G Ck+Gd C FaHg
  PDK_30s861301g002 78 ACPDFRK-GNCKRGDACEFAHG 98
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.22E-572102IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-67399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.97674100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-677100IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-77898IPR000571Zinc finger, CCCH-type
SMARTSM0035612108131IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343108132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMMGEGSHYN PTVHVPPWTP FDDPTAGVAY NLPFRMYEFK VRRCARGRSH DWTECPYAHP  60
GEKARRRDPR KYHYSGTACP DFRKGNCKRG DACEFAHGVF ECWLHPSRYR TQPCKDGTAC  120
RRRVCFFAHT PEQLRVLPEQ QQQQQLSPRT AAAMDSSYDG SPLRHQHTFE PYVSKNLFSS  180
SPTSTLISPP ISPPSESPPM SPSGGPGVLA SLRQLQLSKV RSAPNSWGYG MGGGAGFGSP  240
RGGTGFRAGE EEAVERVESG RPLRAKMFER LSKDSVLEKP DAATPAGPAP DVGWVSELVK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798608.11e-156zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-108C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2H3YGV51e-155A0A2H3YGV5_PHODC; zinc finger CCCH domain-containing protein 2-like
STRINGXP_008798608.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-72C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]