PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s861241g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26311.6 Da PI: 10.0552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 6.1e-12 | 107 | 150 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 + +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ PDK_30s861241g006 107 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150 568***99..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.623 | 84 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-6 | 107 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-8 | 108 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-6 | 110 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-4 | 110 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVSIRRRRYL GLCTGKSSIP VELPKPAAIG NTVENSNQNV KPFSVHPMPS DNLSLQMPIN 60 VSEALPGSSN ASGSSSSKEE VNHYYPGKQI KRRKRHRRKH FEDQEPCVMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL LEEEKQELRQ YKWEDFLAVT 180 RNAINNKKHQ KRLGADRRKK PESQLQSNDG EREKGTHASS ASDDGDADTS VS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 200 | KKHQKRLGADRRKKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008803500.1 | 1e-175 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Refseq | XP_008803501.1 | 1e-175 | ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
TrEMBL | A0A2H3YT59 | 1e-174 | A0A2H3YT59_PHODC; ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
STRING | XP_008803499.1 | 1e-174 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 4e-42 | ERF family protein |