PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s854901g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 594aa MW: 65915.8 Da PI: 8.0895

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s854901g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.2	2.7e-28	85	169	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +Yn+YA +vGF+vr+s+ ++s r+g+i++r+fvCskeg+ ++ ++ +++r+r +tr+gC a+l+vk++++g w vtk+++eHnHe PDK_30s854901g001 85 YYNAYACRVGFRVRVSRCHRSMRDGSIICRRFVCSKEGFYIQKGQA--RSKRQRIVTRVGCMAMLVVKRQSSGSWLVTKFVKEHNHE 169 8**************************************99988..99**********************************8 PP
2	FAR1	77.6	2.4e-24	233	315	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA+++GF+vr+sk ++ r+g+i++r+fvCskeg+ ++ + ++r+ra tr+gC a+l+vkk ++g w+v+++e eHnH+ PDK_30s854901g001 233 FYYAYAEDMGFTVRISKCRRA-RDGSIICRRFVCSKEGYYVRKYGR---TKRSRALTRVGCLARLVVKKLDSGIWVVANFEREHNHP 315 9**************9998.8999*********9987666...99*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-25	85	169	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.7E-21	233	315	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MSSLEAQVLG PEMGPEEDES PNSDLGDIGI ECSDEAMDGP ETPTGKDGEM IESYDRRELI 60 VNEGDRNAEP FVGMEFDGEE AARAYYNAYA CRVGFRVRVS RCHRSMRDGS IICRRFVCSK 120 EGFYIQKGQA RSKRQRIVTR VGCMAMLVVK RQSSGSWLVT KFVKEHNHEP VAPRQVDLKP 180 RMLMEVKKVE VCLDEKENPV ERGLVVATLP QGTSDLEPYE GMQFQSEEAA RTFYYAYAED 240 MGFTVRISKC RRARDGSIIC RRFVCSKEGY YVRKYGRTKR SRALTRVGCL ARLVVKKLDS 300 GIWVVANFER EHNHPPFVVG NELSYQPPKP TRRINCGARA SLPVPSAAML NIMQDSQSSV 360 NLRFNRLHQE GIRFAEEGAT SVEIFNVAMF ALREATQKVI AAKDTDMLPQ LGNLVSGGNT 420 DRLSWTNDSV NQITMGNQQC SKEVRQVAAS NGPKLMQQPL NVVLIAPGLP NESGQAPSAT 480 NFPNGQAVLG GLENQQLNMT IPVSVQKQLS PTAHRLDGNA SPGTSMSVGR KRRCSTSVDG 540 MDSFITVRDV GERDSKQDGA ANQPQVSFFF SITLNINSTS FSYCLCQSSV CLKD

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MSSLEAQVLG PEMGPEEDES PNSDLGDIGI ECSDEAMDGP ETPTGKDGEM IESYDRRELI  60
VNEGDRNAEP FVGMEFDGEE AARAYYNAYA CRVGFRVRVS RCHRSMRDGS IICRRFVCSK  120
EGFYIQKGQA RSKRQRIVTR VGCMAMLVVK RQSSGSWLVT KFVKEHNHEP VAPRQVDLKP  180
RMLMEVKKVE VCLDEKENPV ERGLVVATLP QGTSDLEPYE GMQFQSEEAA RTFYYAYAED  240
MGFTVRISKC RRARDGSIIC RRFVCSKEGY YVRKYGRTKR SRALTRVGCL ARLVVKKLDS  300
GIWVVANFER EHNHPPFVVG NELSYQPPKP TRRINCGARA SLPVPSAAML NIMQDSQSSV  360
NLRFNRLHQE GIRFAEEGAT SVEIFNVAMF ALREATQKVI AAKDTDMLPQ LGNLVSGGNT  420
DRLSWTNDSV NQITMGNQQC SKEVRQVAAS NGPKLMQQPL NVVLIAPGLP NESGQAPSAT  480
NFPNGQAVLG GLENQQLNMT IPVSVQKQLS PTAHRLDGNA SPGTSMSVGR KRRCSTSVDG  540
MDSFITVRDV GERDSKQDGA ANQPQVSFFF SITLNINSTS FSYCLCQSSV CLKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008778479.1	0.0	uncharacterized protein LOC103698264
TrEMBL	A0A2H3X553	0.0	A0A2H3X553_PHODC; uncharacterized protein LOC103698264
STRING	XP_008778479.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-41	FAR1-related sequence 7