PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s847911g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 327aa MW: 38279.4 Da PI: 8.1514

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s847911g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.7	7.6e-24	33	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li+a+++++e+ + +kk +W+++s++m+erg+ +sp+qC++k+++lnkryk++ ++ +++ ++ ++++ + PDK_30s847911g005 33 KWTDRMVRLLITAVSYIGEDAMPEYnnggrrkcavlQKKRKWKSISRVMAERGCYVSPQQCEDKFNDLNKRYKRLIDILGRGtACMVVENPA 124 7************777776643223445556888********************************************5599999999 PP trihelix 81 yfdqle 86 ++ q+e PDK_30s847911g005 125 LLGQME 130 999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-21	31	156	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSDDGDASFT EDGVHDQDDA GKRKKGPPWQ RMKWTDRMVR LLITAVSYIG EDAMPEYNNG 60 GRRKCAVLQK KRKWKSISRV MAERGCYVSP QQCEDKFNDL NKRYKRLIDI LGRGTACMVV 120 ENPALLGQME HISDKLKDEV KKILSSKQLF YEEMCSYHNA NRLHLPHDLA LRRSLQLALS 180 SRDEHDTRRA VHGNNDEDDR SAGTDDEEDD AQEHAAILHG DAGDSCLPKR LKHLPHPQDM 240 SAVAWGQKHS KNFPLLQLEE QRWKIQLQML ELEKQSFEWQ RFSKKKDREL NKLRMENERM 300 KLENERLALE LKRRELEVDL NLKRYQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784156.1	0.0	uncharacterized protein LOC103703173
Refseq	XP_008784157.1	0.0	uncharacterized protein LOC103703173
Refseq	XP_008784158.1	0.0	uncharacterized protein LOC103703173
TrEMBL	A0A2H3XI52	0.0	A0A2H3XI52_PHODC; uncharacterized protein LOC103703173
STRING	XP_008784156.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-84	sequence-specific DNA binding transcription factors