PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s844721g010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 293aa MW: 32371.4 Da PI: 7.7906 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.8 | 1.4e-29 | 226 | 277 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ + PDK_30s844721g010 226 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 277 9*************************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-14 | 223 | 278 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 224 | 277 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-22 | 226 | 277 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-6 | 227 | 275 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MQTQGVFTET TSIPSPDLSL HIRPPRTTPS STADTHHDLS LDLLQRIEAL KPQADSCSNF 60 ACTDLTLSSP LATSEVDGPW RWEGALQDRC HNSHLSDLVL DDRRPIKGIP IYNSNTSPFL 120 SADPTMGFNH QMSSTPSLWS SFCSSVPSSP SSSSGYSSNL DTAASFLHPV MAPPTRFAGL 180 SSDTINYNHH PHHHHQYGIG PLDVSHNMMR SRFMQKLSAK RSMRAPRMRW TSTLHARFVH 240 AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQVFSFL CLRPHSSSSS PST |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-15 | 227 | 277 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008798307.1 | 1e-177 | probable transcription factor RL9 isoform X3 | ||||
TrEMBL | A0A2H3YG99 | 1e-176 | A0A2H3YG99_PHODC; probable transcription factor RL9 isoform X3 | ||||
STRING | XP_008798291.1 | 1e-176 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16560.1 | 1e-36 | G2-like family protein |