PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s843271g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 580aa    MW: 64350.3 Da    PI: 4.4413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s843271g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45e-48311552128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        ppGfrFhPtdeelv +yLk+kv +++++l  +i +vd+yk+eP   ++ +k+++k+wyfFs+rd+ky++g+r+nratk gyWk+tgkd+++ 
  PDK_30s843271g002  31 PPGFRFHPTDEELVLYYLKRKVCRRRIRL-PMIGDVDVYKWEPFPERSLLKSGDKQWYFFSPRDRKYPNGSRSNRATKCGYWKTTGKDRTIS 121
                        8**************************99.88***********8776778899**************************************9 PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + ++++vg kktLv+y+grapkge+tdWvm ey+l
  PDK_30s843271g002 122 Q-NSKAVGNKKTLVYYRGRAPKGERTDWVMYEYTL 155
                        9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5428178IPR003441NAC domain
PROSITE profilePS5100551.80730178IPR003441NAC domain
PfamPF023654.8E-2731155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MGAAPECRGP MSRRRGDDGD EDEGVAGKWW PPGFRFHPTD EELVLYYLKR KVCRRRIRLP  60
MIGDVDVYKW EPFPERSLLK SGDKQWYFFS PRDRKYPNGS RSNRATKCGY WKTTGKDRTI  120
SQNSKAVGNK KTLVYYRGRA PKGERTDWVM YEYTLDDQML MSCSNVQDSY ALYKVFRKSG  180
PGDGSPSLQD SYALYKVFRK SGPGPKNGEQ YGAPFVEKEW EDDSKEVTMP GHPQGGDSTS  240
MLGEGSMLPM DDLEDLLLQI SDEQDIIPQP SECSAFVSEI DVEAEDGSLP VVPSLGDANF  300
TEQNLNWCEL SSEEPDFQIA RPDPAYILPT ETPVTTSTNC SDQGQLKVDE EFLEIRDFND  360
PESTEWRVDD ASNKDIIHDT GGFYDAYDYF DATRFLDEEF VPLDGAGQNP YFDECQASFI  420
TTELWTHEQD FSTSTAGETN HIIMAPPASG IVNASAPSNV GKNTQGQFSS VRDDSDSWFS  480
SALSALLDSV PSSPAIASEN ALISRAFQRV SSFRAGQIGT QEPNAATGGG TVASGRQRGS  540
HSGGFLFISF LVGLVAVFWV LTIGAAVKVF KGLWGKFISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-46111551140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796590.10.0NAC domain-containing protein 17-like
RefseqXP_008796596.10.0NAC domain-containing protein 17-like
RefseqXP_008796603.10.0NAC domain-containing protein 17-like
RefseqXP_017699911.10.0NAC domain-containing protein 17-like
TrEMBLA0A2H3YC370.0A0A2H3YC37_PHODC; NAC domain-containing protein 17-like
STRINGXP_008796590.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1851269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-81NAC domain containing protein 17